Reconstructed influenza A/H3N2 infection histories reveal variation in incidence and antibody dynamics over the life course

Hay, J. A., Zhu, H., Jiang, C. Q., Kwok, K. O., Shen, R., Kucharski, A., Yang, B., Read, J. M., Lessler, J., Cummings, D. A. T. & Riley, S., 5/04/2024, In: medRxiv : the preprint server for health sciences.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

A Bayesian approach to identifying the role of hospital structure and staff interactions in nosocomial transmission of SARS-CoV-2

Bridgen, J. R. E., Lewis, J. M., Todd, S., Taegtmeyer, M., Read, J. M. & Jewell, C. P., 31/03/2024, In: Interface. 21, 212, 20230525.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

The national distribution of lymphatic filariasis cases in Malawi using patient mapping and geostatistical modelling

Barrett, C., Chiphwanya, J., Mkwanda, S., Matipula, D. E., Ndhlovu, P., Chaponda, L., Turner, J. D., Giorgi, E., Betts, H., Martindale, S., Taylor, M. J. & Read, J., 25/03/2024, In: PLoS Neglected Tropical Diseases. e0012056.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Determining the distance patterns in the movements of future doctors in UK between 2002 and 2015: a retrospective cohort study

Hitchings, L., Fleet, B., Smith, D. T., Read, J. M., Melville, C. & Sedda, L., 1/03/2024, In: BMJ Open. 14, 3, e077635.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Prevalence of endemic respiratory viruses during the COVID-19 pandemic in urban and rural Malawi

Vink, E., Banda, L., Amoah, A. S., Kasenda, S., Read, J. M., Jewell, C., Denis, B., Mwale, A. C., Crampin, A., Anscombe, C., Menyere, M. & Ho, A., 29/02/2024, In: Open Forum Infectious Diseases. 11, 2, p. ofad643

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Epidemiology of Human Seasonal Coronaviruses Among People With Mild and Severe Acute Respiratory Illness in Blantyre, Malawi, 2011-2017

Kovacs, D., Mambule, I., Read, J. M., Kiran, A., Chilombe, M., Bvumbwe, T., Aston, S., Menyere, M., Masina, M., Kamzati, M., Ganiza, T. N., Iuliano, D., McMorrow, M., Bar-Zeev, N., Everett, D., French, N. & Ho, A., 14/02/2024, (E-pub ahead of print) In: The Journal of infectious diseases.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Mental health conditions in people affected by filarial lymphoedema in Malawi: prevalence, associated risk factors and the impact of an enhanced self-care intervention

Barrett, C., Chiphwanya, J., Chaponda, L., Matipula, D. E., Turner, J. D., Taylor, M. J., Read, J. M. & Kelly-Hope, L. A., 20/12/2023, In: International Health. 15, Supplement_3, p. iii14-iii27

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Characterizing the evolving SARS-CoV-2 seroprevalence in urban and rural Malawi between February 2021 and April 2022: a population-based cohort study

Banda, L., Ho, A., Kasenda, S., Read, J. M., Jewell, C., Price, A., McLean, E., Dube, A., Chaima, D., Samikwa, L., Nyirenda, T. S., Hughes, E. C., Willett, B. J., Mwale, A. C., Amoah, A. S. & Crampin, A., 1/12/2023, In: International Journal of Infectious Diseases. 137, p. 118-125 8 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Participant perceptions and experiences of a novel community-based respiratory longitudinal sampling method in Liverpool, UK: A mixed methods feasibility study

German, E. L., Nabwera, H. M., Robinson, R., Shiham, F., Liatsikos, K., Parry, C. M., McNamara, C., Kattera, S., Carter, K., Howard, A., Pojar, S., Hamilton, J., Matope, A., Read, J. M., Allen, S. J., Hill, H., Hawcutt, D. B., Urban, B. C., Collins, A. M., Ferreira, D. M., & 2 othersNikolaou, E. & Umer, M. F. (ed.), 9/11/2023, In: PLoS One. 18, 11, e0294133.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

The burden and dynamics of hospital-acquired SARS-CoV-2 in England

Cooper, B. S., Evans, S., Jafari, Y., Pham, T. M., Mo, Y., Lim, C., Pritchard, M. G., Pople, D., Hall, V., Stimson, J., Eyre, D. W., Read, J. M., Donnelly, C. A., Horby, P., Watson, C., Funk, S., Robotham, J. V. & Knight, G. M., 2/11/2023, In: Nature. 623, 7985, p. 132-138 7 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Assessing the use of minimally invasive self-sampling at home for long-term monitoring of the microbiota within UK families

Nikolaou, E., German, E. L., Howard, A., Nabwera, H. M., Matope, A., Robinson, R., Shiham, F., Liatsikos, K., McNamara, C., Kattera, S., Carter, K., Parry, C. M., Read, J. M., Allen, S. J., Urban, B. C., Hawcutt, D. B., Hill, H., Collins, A. M. & Ferreira, D. M., 24/10/2023, In: Scientific Reports. 13, 1, 18201.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Strengthening quality in sexual, reproductive, maternal, and newborn health systems in low- and middle-income countries through midwives and facility mentoring: an integrative review

Anderson, R., Zaman, S. B., Jimmy, A. N., Read, J. M. & Limmer, M., 5/10/2023, In: BMC Pregnancy and Childbirth. 23, 1, 712.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Contact patterns of UK home delivery drivers and their use of protective measures during the COVID-19 pandemic: a cross-sectional study

Bridgen, J. R. E., Wei, H., Whitfield, C., Han, Y., Hall, I., Jewell, C. P., van Tongeren, M. J. A. & Read, J. M., 30/06/2023, In: Occupational and Environmental Medicine. 80, 6, p. 333-338 6 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Household transmission dynamics of seasonal human coronaviruses

Quandelacy, T. M., Hitchings, M. D. T., Lessler, J., Read, J. M., Vukotich, C., Azman, A. S., Salje, H., Zimmer, S., Gao, H., Zheteyeva, Y., Uzicanin, A. & Cummings, D. A. T., 1/05/2023, In: The Journal of infectious diseases. 227, 9, p. 1104-1112 9 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Coughs, colds and “freshers’ flu” survey in the University of Cambridge, 2007–2008

Eames, K. T. D., Tang, M. L., Hill, E. M., Tildesley, M. J., Read, J. M., Keeling, M. J. & Gog, J. R., 31/03/2023, In: Epidemics. 42, 15 p., 100659.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Long term intrinsic cycling in human life course antibody responses to influenza A(H3N2): an observational and modeling study

Yang, B., García-Carreras, B., Lessler, J., Read, J. M., Zhu, H., Metcalf, C. J. E., Hay, J. A., Kwok, K. O., Shen, R., Jiang, C. Q., Guan, Y., Riley, S. & Cummings, D. A., 16/12/2022, In: eLife. 11, e81457.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Social mixing patterns in the UK following the relaxation of COVID-19 pandemic restrictions, July to August 2020: a cross-sectional online survey

Bridgen, J., Jewell, C. & Read, J., 13/12/2022, In: BMJ Open. 12, 12, 8 p., e059231.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Efficient Bayesian inference of instantaneous reproduction numbers at fine spatial scales, with an application to mapping and nowcasting the Covid‐19 epidemic in British local authorities

Teh, Y. W., Elesedy, B., He, B., Hutchinson, M., Zaidi, S., Bhoopchand, A., Paquet, U., Tomasev, N., Read, J. & Diggle, P. J., 8/12/2022, (E-pub ahead of print) In: Journal of the Royal Statistical Society: Series A Statistics in Society.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Estimation of reproduction numbers in real time: Conceptual and statistical challenges

JUNIPER Consortium, 30/11/2022, In: Journal of the Royal Statistical Society: Series A Statistics in Society. 185, 51, p. S112-S130 19 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Authors' reply to the discussion of ‘Efficient Bayesian Inference of Instantaneous Reproduction Numbers at Fine Spatial Scales, with an Application to Mapping and Nowcasting the Covid‐19 Epidemic in British Local Authorities’ by Teh et al. in Session 2 of the Royal Statistical Society's Special Topic Meeting on <scp>COVID</scp> ‐19 transmission: 11 June 2021

Teh, Y. W., Elesedy, B., He, B., Hutchinson, M., Zaidi, S., Bhoopchand, A., Paquet, U., Tomasev, N., Read, J. & Diggle, P. J., 30/11/2022, In: Journal of the Royal Statistical Society: Series A Statistics in Society. 185, S1, p. S107-S109 3 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

The impact of professional midwives and mentoring on the quality and availability of maternity care in government sub-district hospitals in Bangladesh: a mixed-methods observational study

Anderson, R., Williams, A., Jess, N., Read, J. & Limmer, M., 8/11/2022, In: BMC Pregnancy and Childbirth. 22, 1, 20 p., 827.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020

Knight, G. M., Pham, T. M., Stimson, J., Funk, S., Jafari, Y., Pople, D., Evans, S., Yin, M., Brown, C. S., Bhattacharya, A., Hope, R., Semple, M. G., Read, J. M., Cooper, B. S. & Robotham, J. V., 18/06/2022, In: BMC Infectious Diseases. 22, 1, 14 p., 556.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Spatial and Genomic Data to Characterize Endemic Typhoid Transmission

Gauld, J. S., Olgemoeller, F., Heinz, E., Nkhata, R., Bilima, S., Wailan, A. M., Kennedy, N., Mallewa, J., Gordon, M. A., Read, J. M., Heyderman, R. S., Thomson, N. R., Diggle, P. J. & Feasey, N. A., 1/06/2022, In: Clinical Infectious Diseases. 74, 11, p. 1993-2000 8 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Rainfall Anomalies and Typhoid Fever in Blantyre, Malawi

Gauld, J. S., Bilima, S., Diggle, P. J., Feasey, N. A. & Read, J. M., 10/05/2022, In: Epidemiology and Infection. 150, e122.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Effectiveness of infection prevention and control interventions, excluding personal protective equipment, to prevent nosocomial transmission of SARS-CoV-2: a systematic review and call for action

Jafari, Y., Yin, M., Lim, C., Pople, D., Evans, S., Stimson, J., Pham, T. M., Read, J. M., Robotham, J. V., Cooper, B. S., Knight, G. M. & group, LSHTM. CMMID. COVID. W., 1/03/2022, In: Infection Prevention in Practice. 4, 1, 12 p., 100192.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Estimating the potential for global dissemination of pandemic pathogens using the global airline network and healthcare development indices

Meslé, M. MI., Vivancos, R., Hall, I. M., Christley, R. M., Leach, S. & Read, J., 23/02/2022, In: Scientific Reports. 12, 9 p., 3070.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Predicting virologically confirmed influenza using school absences in Allegheny County, Pennsylvania, USA during the 2007-2015 influenza seasons

Quandelacy, T. M., Zimmer, S., Lessler, J., Vukotich, C., Bieltz, R., Grantz, K. H., Galloway, D., Read, J. M., Zheteyeva, Y., Gao, H., Uzicanin, A. & Cummings, D. A. T., 30/11/2021, In: Influenza and Other Respiratory Viruses. 15, 6, p. 757-766 10 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Trends, relationships and case attribution of antibiotic resistance between children and environmental sources in rural India

Mitchell, J., Purohit, M., Jewell, C. P., Read, J. M., Marrone, G., Diwan, V. & Stålsby Lundborg, C., 19/11/2021, In: Scientific Reports. 11, 1, 11 p., 22599.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

The population attributable fraction of cases due to gatherings and groups with relevance to COVID-19 mitigation strategies

Brooks-Pollock, E., Read, J. M., House, T., Medley, G. F., Keeling, M. J. & Danon, L., 19/07/2021, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 376, 1829, 5 p., 20200273.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Mapping social distancing measures to the reproduction number for COVID-19

Brooks-Pollock, E., Read, J. M., McLean, A. R., Keeling, M. J. & Danon, L., 19/07/2021, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 376, 1829, 7 p., 20200276.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Novel coronavirus 2019-nCoV (COVID-19): Early estimation of epidemiological parameters and epidemic size estimates

Read, J. M., Bridgen, J. R. E., Cummings, D. A. T., Ho, A. & Jewell, C. P., 19/07/2021, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 376, 1829, 9 p., 20200265.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Modelling the impact of respiratory syncytial virus (RSV) vaccine and immunoprophylaxis strategies in New Zealand

Prasad, N., Read, J. M., Jewell, C., Waite, B., Trenholme, A. A., Huang, Q. S., Grant, C. C., Newbern, E. C. & Hogan, A. B., 13/07/2021, In: Vaccine. 39, 31, p. 4383-4390 8 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Using serological measures to estimate influenza incidence in the presence of secular trends in exposure and immuno-modulation of antibody response

Quandelacy, T. M., Cummings, D. A. T., Jiang, C. Q., Yang, B., Kwok, K. O., Dai, B., Shen, R., Read, J. M., Zhu, H., Guan, Y., Riley, S. & Lessler, J., 31/03/2021, In: Influenza and Other Respiratory Viruses. 15, 2, p. 235-244 10 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Influenza and other respiratory viral infections associated with absence from school among schoolchildren in Pittsburgh, Pennsylvania, USA: a cohort study

Read, J. M., Zimmer, S., Vukotich C., J., Schweizer, M. L., Galloway, D., Lingle, C., Yearwood, G., Calderone, P., Noble, E., Quadelacy, T., Grantz, K., Rinaldo, C., Gao, H., Rainey, J., Uzicanin, A. & Cummings, D. A. T., 22/03/2021, In: BMC Infectious Diseases. 21, 1, 10 p., 291.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Reconstructing unseen transmission events to infer dengue dynamics from viral sequences

Salje, H., Wesolowski, A., Brown, T. S., Kiang, M. V., Berry, I. M., Lefrancq, N., Fernandez, S., Jarman, R. G., Ruchusatsawat, K., Iamsirithaworn, S., Vandepitte, W. P., Suntarattiwong, P., Read, J. M., Klungthong, C., Thaisomboonsuk, B., Engø-Monsen, K., Buckee, C., Cauchemez, S. & Cummings, D. A. T., 22/03/2021, In: Nature Communications. 12, 1, 10 p., 1810.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Risk of mortality in patients infected with SARS-CoV-2 variant of concern 202012/1: Matched cohort study

Challen, R., Brooks-Pollock, E., Read, J. M., Dyson, L., Tsaneva-Atanasova, K. & Danon, L., 10/03/2021, In: BMJ. 372, 10 p., 579.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Age-specific social mixing of school-aged children in a US setting using proximity detecting sensors and contact surveys

Grantz, K. H., Cummings, D. A. T., Zimmer, S., Vukotich Jr, C., Galloway, D., Schweizer, M. L., Guclu, H., Cousins, J., Lingle, C., Yearwood, G. M. H., Li, K., Calderone, P., Noble, E., Gao, H., Rainey, J., Uzicanin, A. & Read, J. M., 27/01/2021, In: Scientific Reports. 11, 1, 11 p., 2319.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Strong spatial embedding of social networks generates nonstandard epidemic dynamics independent of degree distribution and clustering

Haw, D. J., Pung, R., Read, J. M. & Riley, S., 22/09/2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 38, p. 23636-23642 7 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Efficacy of contact tracing for the containment of the 2019 novel coronavirus (COVID-19)

Keeling, M. J., Hollingsworth, T. D. & Read, J. M., 8/09/2020, In: Journal of Epidemiology and Community Health. 74, 10, p. 861-866 6 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

The potential impact of COVID-19-related disruption on tuberculosis burden

CMMID COVID-19 Working Group, 13/08/2020, In: European Respiratory Journal. 56, 2, 4 p., 2001718.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Intestinal Perforations Associated With a High Mortality and Frequent Complications During an Epidemic of Multidrug-resistant Typhoid Fever in Blantyre, Malawi

Olgemoeller, F., Waluza, J. J., Zeka, D., Gauld, J. S., Diggle, P. J., Read, J. M., Edwards, T., Msefula, C. L., Chirambo, A., Gordon, M. A., Thomson, E., Heyderman, R. S., Borgstein, E. & Feasey, N. A., 29/07/2020, In: Clinical Infectious Diseases. 71, Supplement 2, p. S96-S101 6 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Life course exposures continually shape antibody profiles and risk of seroconversion to influenza

Yang, B., Lessler, J., Zhu, H., Jiang, C. Q., Read, J. M., Hay, J. A., Kwok, K. O., Shen, R., Guan, Y., Riley, S. & Cummings, D. A. T., 23/07/2020, In: PLoS Pathogens. 16, 7, e1008635.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Features of 20 133 UK patients in hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: Prospective observational cohort study

Docherty, A. B., Harrison, E. M., Green, C. A., Hardwick, H. E., Pius, R., Norman, L., Holden, K. A., Read, J. M., Dondelinger, F., Carson, G., Merson, L., Lee, J., Plotkin, D., Sigfrid, L., Halpin, S., Jackson, C., Gamble, C., Horby, P. W., Nguyen-Van-Tam, J. S., Ho, A., & 5 othersRussell, C. D., Dunning, J., Openshaw, P. J. M., Baillie, J. K. & Semple, M. G., 22/05/2020, In: BMJ. 369, 12 p., m1985.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Domestic river water use and risk of typhoid fever: results from a case-control study in Blantyre, Malawi

Gauld, J. S., Olgemoeller, F., Nkhata, R., Li, C., Chirambo, A., Morse, T., Gordon, M. A., Read, J. M., Heyderman, R. S., Kennedy, N., Diggle, P. J. & Feasey, N. A., 1/04/2020, In: Clinical Infectious Diseases. 70, 7, p. 1278-1284 7 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Coordinating the real‐time use of global influenza activity data for better public health planning

Biggerstaff, M., Dahlgren, F., Fitzner, J., George, D., Hammond, A., Hall, I., Haw, D., Imai, N., Johansson, M., Kramer, S., McCaw, J., Moss, R., Pebody, R., Read, J., Reed, C., Reich, N., Riley, S., Vandemaele, K., Viboud, C. & Wu, J., 1/03/2020, In: Influenza and Other Respiratory Viruses. 14, 2, p. 105-110 6 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Childhood malaria case incidence in Malawi between 2004 and 2017: Spatio-temporal modelling of climate and non-climate factors

Chirombo, J., Ceccato, P., Lowe, R., Terlouw, D. J., Thomson, M., Gumbo, A., Diggle, P. & Read, J., 6/01/2020, In: Malaria Journal. 19, 13 p., 5.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Reduction in hospitalisations for acute gastroenteritis-associated childhood seizures since introduction of rotavirus vaccination: A time-series and change-point analysis of hospital admissions in England

Hungerford, D. J., French, N., Iturriza-Gómara, M., Read, J. M., Cunliffe, N. A. & Vivancos, R., 1/11/2019, In: Journal of Epidemiology and Community Health. p. 1020-1025 6 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Patterns of human social contact and contact with animals in Shanghai, China

Zhang, J., Klepac, P., Read, J., Rosello, A., Wang, X., Lai, S., Li, M., Song, Y., Wei, Q., Jiang, H., Yang, J., Lynn, H., Flasche, S., Jit, M. & Yu, H., 22/10/2019, In: Scientific Reports. 9, 11 p., 15141.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

The use and reporting of airline passenger data for infectious disease modelling: a systematic review

Meslé, M. MI., Hall, I. M., Christley, R. M., Leach, S. & Read, J., 1/08/2019, In: Eurosurveillance. 24, 31, 18 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review