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Dr Jonathan Read

Senior Lecturer in Biostatistics

  1. 2021
  2. Published

    Using serological measures to estimate influenza incidence in the presence of secular trends in exposure and immuno-modulation of antibody response

    Quandelacy, T. M., Cummings, D. A. T., Jiang, C. Q., Yang, B., Kwok, K. O., Dai, B., Shen, R., Read, J. M., Zhu, H., Guan, Y., Riley, S. & Lessler, J., 31/03/2021, In: Influenza and Other Respiratory Viruses. 15, 2, p. 235-244 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  3. Published

    Influenza and other respiratory viral infections associated with absence from school among schoolchildren in Pittsburgh, Pennsylvania, USA: a cohort study

    Read, J. M., Zimmer, S., Vukotich C., J., Schweizer, M. L., Galloway, D., Lingle, C., Yearwood, G., Calderone, P., Noble, E., Quadelacy, T., Grantz, K., Rinaldo, C., Gao, H., Rainey, J., Uzicanin, A. & Cummings, D. A. T., 22/03/2021, In: BMC Infectious Diseases. 21, 1, 10 p., 291.

    Research output: Contribution to journalJournal articlepeer-review

  4. Published

    Reconstructing unseen transmission events to infer dengue dynamics from viral sequences

    Salje, H., Wesolowski, A., Brown, T. S., Kiang, M. V., Berry, I. M., Lefrancq, N., Fernandez, S., Jarman, R. G., Ruchusatsawat, K., Iamsirithaworn, S., Vandepitte, W. P., Suntarattiwong, P., Read, J. M., Klungthong, C., Thaisomboonsuk, B., Engø-Monsen, K., Buckee, C., Cauchemez, S. & Cummings, D. A. T., 22/03/2021, In: Nature Communications. 12, 1, 10 p., 1810.

    Research output: Contribution to journalJournal articlepeer-review

  5. Published

    Risk of mortality in patients infected with SARS-CoV-2 variant of concern 202012/1: Matched cohort study

    Challen, R., Brooks-Pollock, E., Read, J. M., Dyson, L., Tsaneva-Atanasova, K. & Danon, L., 10/03/2021, In: BMJ. 372, 10 p., 579.

    Research output: Contribution to journalJournal articlepeer-review

  6. Published

    Age-specific social mixing of school-aged children in a US setting using proximity detecting sensors and contact surveys

    Grantz, K. H., Cummings, D. A. T., Zimmer, S., Vukotich Jr, C., Galloway, D., Schweizer, M. L., Guclu, H., Cousins, J., Lingle, C., Yearwood, G. M. H., Li, K., Calderone, P., Noble, E., Gao, H., Rainey, J., Uzicanin, A. & Read, J. M., 27/01/2021, In: Scientific Reports. 11, 1, 11 p., 2319.

    Research output: Contribution to journalJournal articlepeer-review

  7. 2020
  8. Published

    Strong spatial embedding of social networks generates nonstandard epidemic dynamics independent of degree distribution and clustering

    Haw, D. J., Pung, R., Read, J. M. & Riley, S., 22/09/2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 38, p. 23636-23642 7 p.

    Research output: Contribution to journalJournal articlepeer-review

  9. Published

    Efficacy of contact tracing for the containment of the 2019 novel coronavirus (COVID-19)

    Keeling, M. J., Hollingsworth, T. D. & Read, J. M., 8/09/2020, In: Journal of Epidemiology and Community Health. 74, 10, p. 861-866 6 p.

    Research output: Contribution to journalJournal articlepeer-review

  10. Published

    The potential impact of COVID-19-related disruption on tuberculosis burden

    CMMID COVID-19 Working Group, 13/08/2020, In: European Respiratory Journal. 56, 2, 4 p., 2001718.

    Research output: Contribution to journalJournal articlepeer-review

  11. Published

    Intestinal Perforations Associated With a High Mortality and Frequent Complications During an Epidemic of Multidrug-resistant Typhoid Fever in Blantyre, Malawi

    Olgemoeller, F., Waluza, J. J., Zeka, D., Gauld, J. S., Diggle, P. J., Read, J. M., Edwards, T., Msefula, C. L., Chirambo, A., Gordon, M. A., Thomson, E., Heyderman, R. S., Borgstein, E. & Feasey, N. A., 29/07/2020, In: Clinical Infectious Diseases. 71, Supplement 2, p. S96-S101 6 p.

    Research output: Contribution to journalJournal articlepeer-review

  12. Published

    Life course exposures continually shape antibody profiles and risk of seroconversion to influenza

    Yang, B., Lessler, J., Zhu, H., Jiang, C. Q., Read, J. M., Hay, J. A., Kwok, K. O., Shen, R., Guan, Y., Riley, S. & Cummings, D. A. T., 23/07/2020, In: PLoS Pathogens. 16, 7, e1008635.

    Research output: Contribution to journalJournal articlepeer-review

  13. Published

    Features of 20 133 UK patients in hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: Prospective observational cohort study

    Docherty, A. B., Harrison, E. M., Green, C. A., Hardwick, H. E., Pius, R., Norman, L., Holden, K. A., Read, J. M., Dondelinger, F., Carson, G., Merson, L., Lee, J., Plotkin, D., Sigfrid, L., Halpin, S., Jackson, C., Gamble, C., Horby, P. W., Nguyen-Van-Tam, J. S., Ho, A. & 5 others, Russell, C. D., Dunning, J., Openshaw, P. J. M., Baillie, J. K. & Semple, M. G., 22/05/2020, In: BMJ. 369, 12 p., m1985.

    Research output: Contribution to journalJournal articlepeer-review

  14. Published

    Domestic river water use and risk of typhoid fever: results from a case-control study in Blantyre, Malawi

    Gauld, J. S., Olgemoeller, F., Nkhata, R., Li, C., Chirambo, A., Morse, T., Gordon, M. A., Read, J. M., Heyderman, R. S., Kennedy, N., Diggle, P. J. & Feasey, N. A., 1/04/2020, In: Clinical Infectious Diseases. 70, 7, p. 1278-1284 7 p.

    Research output: Contribution to journalJournal articlepeer-review

  15. Published

    Coordinating the real‐time use of global influenza activity data for better public health planning

    Biggerstaff, M., Dahlgren, F., Fitzner, J., George, D., Hammond, A., Hall, I., Haw, D., Imai, N., Johansson, M., Kramer, S., McCaw, J., Moss, R., Pebody, R., Read, J., Reed, C., Reich, N., Riley, S., Vandemaele, K., Viboud, C. & Wu, J., 1/03/2020, In: Influenza and Other Respiratory Viruses. 14, 2, p. 105-110 6 p.

    Research output: Contribution to journalJournal articlepeer-review

  16. Published

    Childhood malaria case incidence in Malawi between 2004 and 2017: Spatio-temporal modelling of climate and non-climate factors

    Chirombo, J., Ceccato, P., Lowe, R., Terlouw, D. J., Thomson, M., Gumbo, A., Diggle, P. & Read, J., 6/01/2020, In: Malaria Journal. 19, 13 p., 5.

    Research output: Contribution to journalJournal articlepeer-review

  17. 2019
  18. Published

    Reduction in hospitalisations for acute gastroenteritis-associated childhood seizures since introduction of rotavirus vaccination: A time-series and change-point analysis of hospital admissions in England

    Hungerford, D. J., French, N., Iturriza-Gómara, M., Read, J. M., Cunliffe, N. A. & Vivancos, R., 1/11/2019, In: Journal of Epidemiology and Community Health. p. 1020-1025 6 p.

    Research output: Contribution to journalJournal articlepeer-review

  19. Published

    Patterns of human social contact and contact with animals in Shanghai, China

    Zhang, J., Klepac, P., Read, J., Rosello, A., Wang, X., Lai, S., Li, M., Song, Y., Wei, Q., Jiang, H., Yang, J., Lynn, H., Flasche, S., Jit, M. & Yu, H., 22/10/2019, In: Scientific Reports. 9, 11 p., 15141.

    Research output: Contribution to journalJournal articlepeer-review

  20. Published

    The use and reporting of airline passenger data for infectious disease modelling: a systematic review

    Meslé, M. MI., Hall, I. M., Christley, R. M., Leach, S. & Read, J., 1/08/2019, In: Eurosurveillance. 24, 31, 18 p.

    Research output: Contribution to journalJournal articlepeer-review

  21. Published

    Differential mobility and local variation in infection attack rate

    Haw, D. J., Cummings, D. A. T., Lessler, J., Salje, H., Read, J. M. & Riley, S., 22/01/2019, In: PLoS Computational Biology. 15, 1, 16 p., e1006600.

    Research output: Contribution to journalJournal articlepeer-review

  22. 2018
  23. Published

    Who interacts with whom? Social mixing insights from a rural population in India

    Kumar, S., Gosain, M., Sharma, H., Swetts, E., Amarchand, R., Kumar, R., Lafond, K. E., Dawood, F. S., Jain, S., Widdowson, M-A., Read, J. M. & Krishnan, A., 21/12/2018, In: PLoS ONE. 13, 12, 17 p., e0209039.

    Research output: Contribution to journalJournal articlepeer-review

  24. Published

    Pneumococcal carriage in households in Karonga District, Malawi, before and after introduction of 13-valent pneumococcal conjugate vaccination

    Heinsbroek, E., Tafatatha, T., Phiri, A., Swarthout, T. D., Alaerts, M., Crampin, A. C., Chisambo, C., Mwiba, O., Read, J. M. & French, N., 19/11/2018, In: Vaccine. 36, 48, p. 7369-7376 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  25. Published

    Mitigating bias in observational vaccine effectiveness studies using simulated comparator populations: Application to rotavirus vaccination in the UK

    Hungerford, D., Vivancos, R., Read, J. M., Bonnett, L. J., Bar-Zeev, N., Iturriza-Gómara, M., Cunliffe, N. A. & French, N., 29/10/2018, In: Vaccine. 36, 45, p. 6674-6682 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  26. Published

    Prevalence and risk factors of community-associated methicillin-resistant carriage in Asia-Pacific region from 2000 to 2016: a systematic review and meta-analysis

    Wong, J. W., Ip, M., Tang, A., Wei, V. W., Wong, S. Y., Riley, S., Read, J. M. & Kwok, K. O., 12/10/2018, In: Clinical Epidemiology. 10, p. 1489-1501 13 p.

    Research output: Contribution to journalReview articlepeer-review

  27. Published

    Primary Care Influenza-like Illness Surveillance in Ho Chi Minh City, Vietnam 2013-2015

    Todd, S., Huong, N. T. C., Thanh, N. T. L., Vy, N. H. T., Hung, N. T., Thao, T. T. N., Phuong, H. T., van Doorn, H. R., Hang, V. T. T., Chau, N. V. V., Read, J. M., Lalloo, D. G. & Boni, M. F., 09/2018, In: Influenza and Other Respiratory Viruses. 12, 5, p. 623-631 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  28. Published

    Case series of severe neurologic sequelae of ebola virus disease during epidemic, Sierra Leone

    Howlett, P. J., Walder, A. R., Lisk, D. R., Fitzgerald, F., Sevalie, S., Lado, M., N’Jai, A., Brown, C. S., Sahr, F., Sesay, F., Read, J. M., Steptoe, P. J., Beare, N. A. V., Dwivedi, R., Solbrig, M., Deen, G. F., Solomon, T., Semple, M. G. & Scott, J. T., 24/08/2018, In: Emerging Infectious Diseases. 24, 8, p. 1412-1421 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  29. Published

    Prevalence and risk factors of community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA) carriage in Asia-Pacific region from 2000 to 2016: A systematic review and meta-analysis

    Wong, J., Ip, M., Tang, A., Wei, V., Wong, S., Riley, S., Read, J. M. & Kwok, K. O., 08/2018, In: International Journal of Infectious Diseases. 73, Suppl., p. 135-136 2 p.

    Research output: Contribution to journalMeeting abstractpeer-review

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