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Dr Jonathan Read

Senior Lecturer in Biostatistics

  1. Published

    The potential impact of COVID-19-related disruption on tuberculosis burden

    CMMID COVID-19 Working Group, 13/08/2020, In: European Respiratory Journal. 56, 2, 4 p., 2001718.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  2. Published

    Estimation of reproduction numbers in real time: Conceptual and statistical challenges

    JUNIPER Consortium, 30/11/2022, In: Journal of the Royal Statistical Society: Series A Statistics in Society. 185, 51, p. S112-S130 19 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  3. Published

    Enhancing disease surveillance with novel data streams: challenges and opportunities

    Althouse, B. M., Scarpino, S. V., Meyers, L. A., Ayers, J. W., Bargsten, M., Baumbach, J., Brownstein, J. S., Castro, L., Clapham, H., Cummings, D. A. T., Del Valle, S., Eubank, S., Fairchild, G., Finelli, L., Generous, N., George, D., Harper, D. R., Hébert-Dufresne, L., Johansson, M. A., Konty, K., & 16 othersLipsitch, M., Milinovich, G., Miller, J. D., Nsoesie, E. O., Olson, D. R., Paul, M., Polgreen, P. M., Priedhorsky, R., Read, J. M., Rodríguez-Barraquer, I., Smith, D. J., Stefansen, C., Swerdlow, D. L., Thompson, D., Vespignani, A. & Wesolowski, A., 1/12/2015, In: EPJ Data Science. 4, 1, p. 1-8 8 p., 17.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  4. Published

    The impact of professional midwives and mentoring on the quality and availability of maternity care in government sub-district hospitals in Bangladesh: a mixed-methods observational study

    Anderson, R., Williams, A., Jess, N., Read, J. & Limmer, M., 8/11/2022, In: BMC Pregnancy and Childbirth. 22, 1, 20 p., 827.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  5. Published

    Strengthening quality in sexual, reproductive, maternal, and newborn health systems in low- and middle-income countries through midwives and facility mentoring: an integrative review

    Anderson, R., Zaman, S. B., Jimmy, A. N., Read, J. M. & Limmer, M., 5/10/2023, In: BMC Pregnancy and Childbirth. 23, 1, 712.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  6. Published

    Characterizing the evolving SARS-CoV-2 seroprevalence in urban and rural Malawi between February 2021 and April 2022: a population-based cohort study

    Banda, L., Ho, A., Kasenda, S., Read, J. M., Jewell, C., Price, A., McLean, E., Dube, A., Chaima, D., Samikwa, L., Nyirenda, T. S., Hughes, E. C., Willett, B. J., Mwale, A. C., Amoah, A. S. & Crampin, A., 1/12/2023, In: International Journal of Infectious Diseases. 137, p. 118-125 8 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  7. Published

    Mental health conditions in people affected by filarial lymphoedema in Malawi: prevalence, associated risk factors and the impact of an enhanced self-care intervention

    Barrett, C., Chiphwanya, J., Chaponda, L., Matipula, D. E., Turner, J. D., Taylor, M. J., Read, J. M. & Kelly-Hope, L. A., 20/12/2023, In: International Health. 15, Supplement_3, p. iii14-iii27

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  8. Published

    Coordinating the real‐time use of global influenza activity data for better public health planning

    Biggerstaff, M., Dahlgren, F., Fitzner, J., George, D., Hammond, A., Hall, I., Haw, D., Imai, N., Johansson, M., Kramer, S., McCaw, J., Moss, R., Pebody, R., Read, J., Reed, C., Reich, N., Riley, S., Vandemaele, K., Viboud, C. & Wu, J., 1/03/2020, In: Influenza and Other Respiratory Viruses. 14, 2, p. 105-110 6 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  9. Published

    Social mixing patterns in the UK following the relaxation of COVID-19 pandemic restrictions, July to August 2020: a cross-sectional online survey

    Bridgen, J., Jewell, C. & Read, J., 13/12/2022, In: BMJ Open. 12, 12, 8 p., e059231.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  10. Published

    Contact patterns of UK home delivery drivers and their use of protective measures during the COVID-19 pandemic: a cross-sectional study

    Bridgen, J. R. E., Wei, H., Whitfield, C., Han, Y., Hall, I., Jewell, C. P., van Tongeren, M. J. A. & Read, J. M., 30/06/2023, In: Occupational and Environmental Medicine. 80, 6, p. 333-338 6 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  11. E-pub ahead of print

    A Bayesian approach to identifying the role of hospital structure and staff interactions in nosocomial transmission of SARS-CoV-2

    Bridgen, J. R. E., Lewis, J. M., Todd, S., Taegtmeyer, M., Read, J. M. & Jewell, C. P., 31/03/2024, In: Interface. 21, 212, 20230525.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  12. Published

    The population attributable fraction of cases due to gatherings and groups with relevance to COVID-19 mitigation strategies

    Brooks-Pollock, E., Read, J. M., House, T., Medley, G. F., Keeling, M. J. & Danon, L., 19/07/2021, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 376, 1829, 5 p., 20200273.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  13. Published

    Mapping social distancing measures to the reproduction number for COVID-19

    Brooks-Pollock, E., Read, J. M., McLean, A. R., Keeling, M. J. & Danon, L., 19/07/2021, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 376, 1829, 7 p., 20200276.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  14. Published

    Risk of mortality in patients infected with SARS-CoV-2 variant of concern 202012/1: Matched cohort study

    Challen, R., Brooks-Pollock, E., Read, J. M., Dyson, L., Tsaneva-Atanasova, K. & Danon, L., 10/03/2021, In: BMJ. 372, 10 p., 579.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  15. Published

    European red squirrel population dynamics driven by squirrelpox at a gray squirrel invasion interface

    Chantrey, J., Dale, T. D., Read, J. M., White, S., Whitfield, F., Jones, D., McInnes, C. J. & Begon, M., 10/2014, In: Ecology and Evolution. 4, 19, p. 3788-3799 12 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  16. Published

    Childhood malaria case incidence in Malawi between 2004 and 2017: Spatio-temporal modelling of climate and non-climate factors

    Chirombo, J., Ceccato, P., Lowe, R., Terlouw, D. J., Thomson, M., Gumbo, A., Diggle, P. & Read, J., 6/01/2020, In: Malaria Journal. 19, 13 p., 5.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  17. Published

    The burden and dynamics of hospital-acquired SARS-CoV-2 in England

    Cooper, B. S., Evans, S., Jafari, Y., Pham, T. M., Mo, Y., Lim, C., Pritchard, M. G., Pople, D., Hall, V., Stimson, J., Eyre, D. W., Read, J. M., Donnelly, C. A., Horby, P., Watson, C., Funk, S., Robotham, J. V. & Knight, G. M., 2/11/2023, In: Nature. 623, 7985, p. 132-138 7 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  18. Published

    Social encounter networks: characterizing Great Britain

    Danon, L., Read, J. M., House, T. A., Vernon, M. C. & Keeling, M. J., 22/08/2013, In: Proceedings of the Royal Society B: Biological Sciences. 280, 1765, 10 p., 20131037.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  19. Published

    Social encounter networks: collective properties and disease transmission

    Danon, L., House, T. A., Read, J. M. & Keeling, M. J., 7/11/2012, In: Interface. 9, 76, p. 2826-2833 8 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  20. Published

    Features of 20 133 UK patients in hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: Prospective observational cohort study

    Docherty, A. B., Harrison, E. M., Green, C. A., Hardwick, H. E., Pius, R., Norman, L., Holden, K. A., Read, J. M., Dondelinger, F., Carson, G., Merson, L., Lee, J., Plotkin, D., Sigfrid, L., Halpin, S., Jackson, C., Gamble, C., Horby, P. W., Nguyen-Van-Tam, J. S., Ho, A., & 5 othersRussell, C. D., Dunning, J., Openshaw, P. J. M., Baillie, J. K. & Semple, M. G., 22/05/2020, In: BMJ. 369, 12 p., m1985.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  21. Published

    Epidemic prediction and control in weighted networks

    Eames, K. T. D., Read, J. M. & Edmunds, W. J., 03/2009, In: Epidemics. 1, 1, p. 70-76 7 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  22. Published

    Networks in epidemiology

    Eames, K. T. D. & Read, J. M., 2008, Bio-inspired computing and communication: First Workshop on Bio-Inspired Design of Networks, BIOWIRE 2007 Cambridge, UK, April 2-5, 2007 Revised Selected Papers. Lio, P., Yoneki, E., Crowcroft, J. & Verma, D. C. (eds.). Berlin: Springer Verlag, p. 79-90 12 p. (Lecture Notes in Computer Science; vol. 5151).

    Research output: Contribution in Book/Report/Proceedings - With ISBN/ISSNConference contribution/Paperpeer-review

  23. Published

    Coughs, colds and “freshers’ flu” survey in the University of Cambridge, 2007–2008

    Eames, K. T. D., Tang, M. L., Hill, E. M., Tildesley, M. J., Read, J. M., Keeling, M. J. & Gog, J. R., 31/03/2023, In: Epidemics. 42, 15 p., 100659.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  24. Published

    Domestic river water use and risk of typhoid fever: results from a case-control study in Blantyre, Malawi

    Gauld, J. S., Olgemoeller, F., Nkhata, R., Li, C., Chirambo, A., Morse, T., Gordon, M. A., Read, J. M., Heyderman, R. S., Kennedy, N., Diggle, P. J. & Feasey, N. A., 1/04/2020, In: Clinical Infectious Diseases. 70, 7, p. 1278-1284 7 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  25. Published

    Rainfall Anomalies and Typhoid Fever in Blantyre, Malawi

    Gauld, J. S., Bilima, S., Diggle, P. J., Feasey, N. A. & Read, J. M., 10/05/2022, In: Epidemiology and Infection. 150, e122.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  26. Published

    Spatial and Genomic Data to Characterize Endemic Typhoid Transmission

    Gauld, J. S., Olgemoeller, F., Heinz, E., Nkhata, R., Bilima, S., Wailan, A. M., Kennedy, N., Mallewa, J., Gordon, M. A., Read, J. M., Heyderman, R. S., Thomson, N. R., Diggle, P. J. & Feasey, N. A., 1/06/2022, In: Clinical Infectious Diseases. 74, 11, p. 1993-2000 8 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  27. Published

    Participant perceptions and experiences of a novel community-based respiratory longitudinal sampling method in Liverpool, UK: A mixed methods feasibility study

    German, E. L., Nabwera, H. M., Robinson, R., Shiham, F., Liatsikos, K., Parry, C. M., McNamara, C., Kattera, S., Carter, K., Howard, A., Pojar, S., Hamilton, J., Matope, A., Read, J. M., Allen, S. J., Hill, H., Hawcutt, D. B., Urban, B. C., Collins, A. M., Ferreira, D. M., & 2 othersNikolaou, E. & Umer, M. F. (ed.), 9/11/2023, In: PLoS One. 18, 11, e0294133.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  28. Published

    Age-specific social mixing of school-aged children in a US setting using proximity detecting sensors and contact surveys

    Grantz, K. H., Cummings, D. A. T., Zimmer, S., Vukotich Jr, C., Galloway, D., Schweizer, M. L., Guclu, H., Cousins, J., Lingle, C., Yearwood, G. M. H., Li, K., Calderone, P., Noble, E., Gao, H., Rainey, J., Uzicanin, A. & Read, J. M., 27/01/2021, In: Scientific Reports. 11, 1, 11 p., 2319.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  29. Published

    Social contact networks and mixing among students in K-12 schools in Pittsburgh, PA

    Guclu, H., Read, J. M., Vukotich, C. J., Galloway, D. D., Gao, H., Rainey, J. J., Uzicanin, A., Zimmer, S. M. & Cummings, D. A. T., 15/03/2016, In: PLoS ONE. 11, 3, 19 p., e0151139.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  30. Published

    Differential mobility and local variation in infection attack rate

    Haw, D. J., Cummings, D. A. T., Lessler, J., Salje, H., Read, J. M. & Riley, S., 22/01/2019, In: PLoS Computational Biology. 15, 1, 16 p., e1006600.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  31. Published

    Strong spatial embedding of social networks generates nonstandard epidemic dynamics independent of degree distribution and clustering

    Haw, D. J., Pung, R., Read, J. M. & Riley, S., 22/09/2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 38, p. 23636-23642 7 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  32. Published

    Pneumococcal acquisition among infants exposed to HIV in rural Malawi: a longitudinal household study

    Heinsbroek, E., Tafatatha, T., Chisambo, C., Phiri, A., Mwiba, O., Ngwira, B., Crampin, A. C., Read, J. M. & French, N., 1/01/2016, In: American Journal of Epidemiology. 183, 1, p. 70-78 9 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  33. Published

    Persisting high prevalence of pneumococcal carriage among HIV-infected adults receiving antiretroviral therapy in Malawi: a cohort study

    Heinsbroek, E., Tafatatha, T., Phiri, A., Ngwira, B., Crampin, A. C., Read, J. M. & French, N., 10/09/2015, In: AIDS. 29, 14, p. 1837-1844 8 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  34. Published

    Pneumococcal carriage in households in Karonga District, Malawi, before and after introduction of 13-valent pneumococcal conjugate vaccination

    Heinsbroek, E., Tafatatha, T., Phiri, A., Swarthout, T. D., Alaerts, M., Crampin, A. C., Chisambo, C., Mwiba, O., Read, J. M. & French, N., 19/11/2018, In: Vaccine. 36, 48, p. 7369-7376 8 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  35. Published

    Determining the distance patterns in the movements of future doctors in UK between 2002 and 2015: a retrospective cohort study

    Hitchings, L., Fleet, B., Smith, D. T., Read, J. M., Melville, C. & Sedda, L., 1/03/2024, In: BMJ Open. 14, 3, e077635.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  36. Published

    Testing the hypothesis of preferential attachment in social network formation

    House, T., Read, J. M., Danon, L. & Keeling, M. J., 12/2015, In: EPJ Data Science. 4, 1, 13 p., 13.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  37. Published

    Modelling the impact of local reactive school closures on critical care provision during an influenza pandemic

    House, T., Baguelin, M., Van Hoek, A. J., White, P. J., Sadique, Z., Eames, K., Read, J. M., Hens, N., Melegaro, A., Edmunds, W. J. & Keeling, M. J., 22/09/2011, In: Proceedings of the Royal Society B: Biological Sciences. 278, 1719, p. 2753-2760 8 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  38. Published

    Case series of severe neurologic sequelae of ebola virus disease during epidemic, Sierra Leone

    Howlett, P. J., Walder, A. R., Lisk, D. R., Fitzgerald, F., Sevalie, S., Lado, M., N’Jai, A., Brown, C. S., Sahr, F., Sesay, F., Read, J. M., Steptoe, P. J., Beare, N. A. V., Dwivedi, R., Solbrig, M., Deen, G. F., Solomon, T., Semple, M. G. & Scott, J. T., 24/08/2018, In: Emerging Infectious Diseases. 24, 8, p. 1412-1421 10 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  39. Published

    Early impact of rotavirus vaccination in a large paediatric hospital in the UK

    Hungerford, D., Read, J. M., Cooke, R. P. D., Vivancos, R., Iturriza-Gómara, M., Allen, D. J., French, N. & Cunliffe, N., 06/2016, In: Journal of Hospital Infection. 93, 2, p. 117-120 4 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  40. Published

    In-season and out-of-season variation of rotavirus genotype distribution and age of infection across 12 European countries before the introduction of routine vaccination, 2007/08 to 2012/13

    Hungerford, D., Vivancos, R., Read, J. M., Pitzer, V. E., Cunliffe, N., French, N., Iturriza-Gómara, M. & EuroRotaNet network members, 14/01/2016, In: Eurosurveillance. 21, 2, 12 p., 5.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  41. Published

    Rotavirus vaccine impact and socioeconomic deprivation: an interrupted time-series analysis of gastrointestinal disease outcomes across primary and secondary care in the UK

    Hungerford, D., Vivancos, R., Read, J. M., Iturriza-Gόmara, M., French, N. & Cunliffe, N. A., 29/01/2018, In: BMC Medicine. 16, 1, 10 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  42. Published

    Mitigating bias in observational vaccine effectiveness studies using simulated comparator populations: Application to rotavirus vaccination in the UK

    Hungerford, D., Vivancos, R., Read, J. M., Bonnett, L. J., Bar-Zeev, N., Iturriza-Gómara, M., Cunliffe, N. A. & French, N., 29/10/2018, In: Vaccine. 36, 45, p. 6674-6682 9 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  43. Published

    Reduction in hospitalisations for acute gastroenteritis-associated childhood seizures since introduction of rotavirus vaccination: A time-series and change-point analysis of hospital admissions in England

    Hungerford, D. J., French, N., Iturriza-Gómara, M., Read, J. M., Cunliffe, N. A. & Vivancos, R., 1/11/2019, In: Journal of Epidemiology and Community Health. p. 1020-1025 6 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  44. Published

    Prospective cohort study to investigate the burden and transmission of acute gastroenteritis in care homes: a study protocol

    Inns, T., Pulawska-Czub, A., Harris, J. P., Vivancos, R., Read, J. M., Beeching, N. J., Allen, D. J., Iturriza-Gomara, M. & O'Brien, S. J., 1/11/2017, In: BMJ Open. 7, 11, 7 p., e018867.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  45. Published

    Effectiveness of infection prevention and control interventions, excluding personal protective equipment, to prevent nosocomial transmission of SARS-CoV-2: a systematic review and call for action

    Jafari, Y., Yin, M., Lim, C., Pople, D., Evans, S., Stimson, J., Pham, T. M., Read, J. M., Robotham, J. V., Cooper, B. S., Knight, G. M. & group, LSHTM. CMMID. COVID. W., 1/03/2022, In: Infection Prevention in Practice. 4, 1, 12 p., 100192.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  46. Published

    Cohort Profile: a study of influenza immunity in the urban and rural Guangzhou region of China: the Fluscape Study

    Jiang, C. Q., Lessler, J., Kim, L., Kwok, K. O., Read, J. M., Wang, S., Tan, L., Hast, M., Zhu, H., Guan, Y., Riley, S. & Cummings, D. A. T., 04/2017, In: International Journal of Epidemiology. 46, 2, 7 p., e16.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  47. Published

    The invasion and coexistence of competing Wolbachia strains

    Keeling, M. J., Jiggins, F. M. & Read, J. M., 10/2003, In: Heredity. 91, 4, p. 382-388 7 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  48. Published

    Efficacy of contact tracing for the containment of the 2019 novel coronavirus (COVID-19)

    Keeling, M. J., Hollingsworth, T. D. & Read, J. M., 8/09/2020, In: Journal of Epidemiology and Community Health. 74, 10, p. 861-866 6 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  49. Published

    The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020

    Knight, G. M., Pham, T. M., Stimson, J., Funk, S., Jafari, Y., Pople, D., Evans, S., Yin, M., Brown, C. S., Bhattacharya, A., Hope, R., Semple, M. G., Read, J. M., Cooper, B. S. & Robotham, J. V., 18/06/2022, In: BMC Infectious Diseases. 22, 1, 14 p., 556.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  50. E-pub ahead of print

    Epidemiology of Human Seasonal Coronaviruses Among People With Mild and Severe Acute Respiratory Illness in Blantyre, Malawi, 2011-2017

    Kovacs, D., Mambule, I., Read, J. M., Kiran, A., Chilombe, M., Bvumbwe, T., Aston, S., Menyere, M., Masina, M., Kamzati, M., Ganiza, T. N., Iuliano, D., McMorrow, M., Bar-Zeev, N., Everett, D., French, N. & Ho, A., 14/02/2024, (E-pub ahead of print) In: The Journal of infectious diseases.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

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