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Research

Dr Jonathan Read

Senior Lecturer in Biostatistics

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  1. 2001
  2. Published

    Exploring the density-dependent structure of blowfly populations by nonparametric additive modeling

    Lingjaerde, O. C., Stenseth, N. C., Kristoffersen, A. B., Smith, R. H., Moe, S. J., Read, J. M., Daniels, S. & Simkiss, K., 09/2001, In: Ecology. 82, 9, p. 2645-2658 14 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  3. 2002
  4. Published

    HeathMod: a model of the impact of seasonal grazing by sheep on upland heaths dominated by Calluna vulgaris (heather)

    Read, J. M., Birch, C. P. D. & Milne, J. A., 06/2002, In: Biological Conservation. 105, 3, p. 279-292 14 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  5. 2003
  6. Published

    Disease evolution on networks: the role of contact structure

    Read, J. M. & Keeling, M. J., 7/04/2003, In: Proceedings of the Royal Society B: Biological Sciences. 270, 1516, p. 699-708 10 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  7. Published

    The invasion and coexistence of competing Wolbachia strains

    Keeling, M. J., Jiggins, F. M. & Read, J. M., 10/2003, In: Heredity. 91, 4, p. 382-388 7 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  8. 2006
  9. Published

    Disease evolution across a range of spatio-temporal scales

    Read, J. M. & Keeling, M. J., 09/2006, In: Theoretical Population Biology. 70, 2, p. 201-213 13 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  10. 2007
  11. Published

    Stochasticity generates an evolutionary instability for infectious disease

    Read, J. M. & Keeling, M. J., 09/2007, In: Ecology Letters. 10, 9, p. 818-827 10 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  12. 2008
  13. Published

    Networks in epidemiology

    Eames, K. T. D. & Read, J. M., 2008, Bio-inspired computing and communication: First Workshop on Bio-Inspired Design of Networks, BIOWIRE 2007 Cambridge, UK, April 2-5, 2007 Revised Selected Papers. Lio, P., Yoneki, E., Crowcroft, J. & Verma, D. C. (eds.). Berlin: Springer Verlag, p. 79-90 12 p. (Lecture Notes in Computer Science; vol. 5151).

    Research output: Contribution in Book/Report/Proceedings - With ISBN/ISSN › Conference contribution/Paper › peer-review

  14. Published

    Dynamic social networks and the implications for the spread of infectious disease

    Read, J. M., Eames, K. T. D. & Edmunds, W. J., 6/09/2008, In: Interface. 5, 26, p. 1001-1007 7 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  15. 2009
  16. Published

    Epidemic prediction and control in weighted networks

    Eames, K. T. D., Read, J. M. & Edmunds, W. J., 03/2009, In: Epidemics. 1, 1, p. 70-76 7 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  17. Published

    The use of satellite imagery in contact/travel questionnaires

    Lessler, J., Read, J. M., Riley, S. R. & Cummings, D. A. T., 1/06/2009, In: American Journal of Epidemiology. 169, Suppl. 11, p. S59-S59 1 p., 236.

    Research output: Contribution to Journal/Magazine › Meeting abstract › peer-review

  18. 2011
  19. Published

    Location-specific patterns of exposure to recent pre-pandemic strains of influenza A in southern China

    Lessler, J., Cummings, D. A. T., Read, J. M., Wang, S., Zhu, H., Smith, G. J. D., Guan, Y., Jiang, C. Q. & Riley, S., 9/08/2011, In: Nature Communications. 2, 9 p., 423.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  20. Published

    Modelling the impact of local reactive school closures on critical care provision during an influenza pandemic

    House, T., Baguelin, M., Van Hoek, A. J., White, P. J., Sadique, Z., Eames, K., Read, J. M., Hens, N., Melegaro, A., Edmunds, W. J. & Keeling, M. J., 22/09/2011, In: Proceedings of the Royal Society B: Biological Sciences. 278, 1719, p. 2753-2760 8 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  21. 2012
  22. Published

    Evidence for antigenic seniority in influenza A (H3N2) antibody responses in Southern China

    Lessler, J., Riley, S., Read, J. M., Wang, S., Zhu, H., Smith, G. J. D., Guan, Y., Jiang, C. Q. & Cummings, D. A. T., 19/07/2012, In: PLoS Pathogens. 8, 7, 11 p., 1002802.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  23. Published

    Social encounter networks: collective properties and disease transmission

    Danon, L., House, T. A., Read, J. M. & Keeling, M. J., 7/11/2012, In: Interface. 9, 76, p. 2826-2833 8 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  24. Published

    Close encounters of the infectious kind: methods to measure social mixing behaviour

    Read, J. M., Edmunds, W. J., Riley, S., Lessler, J. & Cummings, D. A. T., 12/2012, In: Epidemiology and Infection. 140, 12, p. 2117-2130 14 p.

    Research output: Contribution to Journal/Magazine › Literature review › peer-review

  25. 2013
  26. Published

    Social encounter networks: characterizing Great Britain

    Danon, L., Read, J. M., House, T. A., Vernon, M. C. & Keeling, M. J., 22/08/2013, In: Proceedings of the Royal Society B: Biological Sciences. 280, 1765, 10 p., 20131037.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  27. 2014
  28. Published

    The spatiotemporal association of non-prescription retail sales with cases during the 2009 influenza pandemic in Great Britain

    Todd, S., Diggle, P. J., White, P. J., Fearne, A. & Read, J., 2014, In: BMJ Open. 4, 4, p. 1-9 9 p., e004869.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  29. Published

    Social mixing patterns in rural and urban areas of southern China

    Read, J. M., Lessler, J., Riley, S., Wang, S., Tan, L. J., Kwok, K. O., Guan, Y., Jiang, C. Q. & Cummings, D. A. T., 22/06/2014, In: Proceedings of the Royal Society B: Biological Sciences. 281, 1785, 8 p., 20140268.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  30. Published

    The Contribution of Social Behaviour to the Transmission of Influenza A in a Human Population

    Kucharski, A. J., Kwok, K. O., Wei, V. W. I., Cowling, B. J., Read, J. M., Lessler, J., Cummings, D. A. & Riley, S., 26/06/2014, In: PLoS Pathogens. 10, 6, 8 p., 1004206.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  31. Published

    Risk factors for UK Plasmodium falciparum cases

    Pinsent, A., Read, J. M., Griffin, J. T., Smith, V., Gething, P. W., Ghani, A. C., Pasvol, G. & Hollingsworth, T. D., 4/08/2014, In: Malaria Journal. 13, 8 p., 298.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  32. Published

    Social contacts and the locations in which they occur as risk factors for influenza infection

    Kwok, K. O., Cowling, B. J., Wei, V. W. I., Wu, K. M., Read, J. M., Lessler, J., Cummings, D. A., Peiris, J. S. M. & Riley, S., 22/08/2014, In: Proceedings of the Royal Society B: Biological Sciences. 281, 1789, 9 p., 20140709.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  33. Published

    European red squirrel population dynamics driven by squirrelpox at a gray squirrel invasion interface

    Chantrey, J., Dale, T. D., Read, J. M., White, S., Whitfield, F., Jones, D., McInnes, C. J. & Begon, M., 10/2014, In: Ecology and Evolution. 4, 19, p. 3788-3799 12 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  34. 2015
  35. Published

    Effectiveness of screening for Ebola at airports

    Read, J., Diggle, P. J., Chirombo, J., Solomon, T. & Baylis, M., 3/01/2015, In: Lancet. 385, 9962, p. 23-24 2 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  36. Published

    Estimating the Life Course of Influenza A (H3N2) Antibody Responses from Cross-Sectional Data

    Kucharski, A. J., Lessler, J., Read, J. M., Zhu, H., Jiang, C. Q., Guan, Y., Cummings, D. A. T. & Riley, S., 3/03/2015, In: Plos Biology. 13, 3, 16 p., 1002082.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  37. Published

    Persisting high prevalence of pneumococcal carriage among HIV-infected adults receiving antiretroviral therapy in Malawi: a cohort study

    Heinsbroek, E., Tafatatha, T., Phiri, A., Ngwira, B., Crampin, A. C., Read, J. M. & French, N., 10/09/2015, In: AIDS. 29, 14, p. 1837-1844 8 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  38. Published

    Testing the hypothesis of preferential attachment in social network formation

    House, T., Read, J. M., Danon, L. & Keeling, M. J., 12/2015, In: EPJ Data Science. 4, 1, 13 p., 13.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  39. Published

    Enhancing disease surveillance with novel data streams: challenges and opportunities

    Althouse, B. M., Scarpino, S. V., Meyers, L. A., Ayers, J. W., Bargsten, M., Baumbach, J., Brownstein, J. S., Castro, L., Clapham, H., Cummings, D. A. T., Del Valle, S., Eubank, S., Fairchild, G., Finelli, L., Generous, N., George, D., Harper, D. R., Hébert-Dufresne, L., Johansson, M. A., Konty, K., & 16 othersLipsitch, M., Milinovich, G., Miller, J. D., Nsoesie, E. O., Olson, D. R., Paul, M., Polgreen, P. M., Priedhorsky, R., Read, J. M., Rodríguez-Barraquer, I., Smith, D. J., Stefansen, C., Swerdlow, D. L., Thompson, D., Vespignani, A. & Wesolowski, A., 1/12/2015, In: EPJ Data Science. 4, 1, p. 1-8 8 p., 17.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  40. 2016
  41. Published

    Pneumococcal acquisition among infants exposed to HIV in rural Malawi: a longitudinal household study

    Heinsbroek, E., Tafatatha, T., Chisambo, C., Phiri, A., Mwiba, O., Ngwira, B., Crampin, A. C., Read, J. M. & French, N., 1/01/2016, In: American Journal of Epidemiology. 183, 1, p. 70-78 9 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  42. Published

    In-season and out-of-season variation of rotavirus genotype distribution and age of infection across 12 European countries before the introduction of routine vaccination, 2007/08 to 2012/13

    Hungerford, D., Vivancos, R., Read, J. M., Pitzer, V. E., Cunliffe, N., French, N., Iturriza-Gómara, M. & EuroRotaNet network members, 14/01/2016, In: Eurosurveillance. 21, 2, 12 p., 5.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  43. Published

    Social contact networks and mixing among students in K-12 schools in Pittsburgh, PA

    Guclu, H., Read, J. M., Vukotich, C. J., Galloway, D. D., Gao, H., Rainey, J. J., Uzicanin, A., Zimmer, S. M. & Cummings, D. A. T., 15/03/2016, In: PLoS ONE. 11, 3, 19 p., e0151139.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  44. Published

    Design of a study to examine contact mixing and acute respiratory infection in Ballabgarh, Haryana

    Kumar, S., Amarchand, R., Gosain, M., Sharma, H., Dawood, F., Jain, S., Lafond, K., Widdowson, M-A., Read, J. M. & Krishnan, A., 04/2016, In: International Journal of Infectious Diseases. 45, Suppl. 1, p. 282 1 p.

    Research output: Contribution to Journal/Magazine › Meeting abstract

  45. Published

    Early impact of rotavirus vaccination in a large paediatric hospital in the UK

    Hungerford, D., Read, J. M., Cooke, R. P. D., Vivancos, R., Iturriza-Gómara, M., Allen, D. J., French, N. & Cunliffe, N., 06/2016, In: Journal of Hospital Infection. 93, 2, p. 117-120 4 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  46. Published

    A comparison of hemagglutination inhibition and neutralization assays for characterizing immunity to seasonal influenza A

    Truelove, S., Zhu, H., Lessler, J., Riley, S., Read, J. M., Wang, S., Kwok, K. O., Guan, Y., Jiang, C. Q. & Cummings, D. A. T., 11/2016, In: Influenza and Other Respiratory Viruses. 10, 6, p. 518-524 7 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  47. 2017
  48. Published

    Cohort Profile: a study of influenza immunity in the urban and rural Guangzhou region of China: the Fluscape Study

    Jiang, C. Q., Lessler, J., Kim, L., Kwok, K. O., Read, J. M., Wang, S., Tan, L., Hast, M., Zhu, H., Guan, Y., Riley, S. & Cummings, D. A. T., 04/2017, In: International Journal of Epidemiology. 46, 2, 7 p., e16.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  49. Published

    Prospective cohort study to investigate the burden and transmission of acute gastroenteritis in care homes: a study protocol

    Inns, T., Pulawska-Czub, A., Harris, J. P., Vivancos, R., Read, J. M., Beeching, N. J., Allen, D. J., Iturriza-Gomara, M. & O'Brien, S. J., 1/11/2017, In: BMJ Open. 7, 11, 7 p., e018867.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  50. 2018
  51. Published

    Temporal variation of human encounters and the number of locations in which they occur: A longitudinal study of Hong Kong residents

    Kwok, K. O., Cowling, B., Wei, V., Riley, S. & Read, J. M., 01/2018, In: Interface. 15, 138, 10 p., 20170838.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  52. Published

    Rotavirus vaccine impact and socioeconomic deprivation: an interrupted time-series analysis of gastrointestinal disease outcomes across primary and secondary care in the UK

    Hungerford, D., Vivancos, R., Read, J. M., Iturriza-Gόmara, M., French, N. & Cunliffe, N. A., 29/01/2018, In: BMC Medicine. 16, 1, 10 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  53. Published

    A systematic review of transmission dynamic studies of methicillin-resistant Staphylococcus aureus in non-hospital residential facilities

    Kwok, K. O., Read, J. M., Tang, A., Chen, H., Riley, S. & Kam, K. M., 18/04/2018, In: BMC Infectious Diseases. 18, 1, 13 p., 188.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  54. Published

    Prevalence and risk factors of community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA) carriage in Asia-Pacific region from 2000 to 2016: A systematic review and meta-analysis

    Wong, J., Ip, M., Tang, A., Wei, V., Wong, S., Riley, S., Read, J. M. & Kwok, K. O., 08/2018, In: International Journal of Infectious Diseases. 73, Suppl., p. 135-136 2 p.

    Research output: Contribution to Journal/Magazine › Meeting abstract › peer-review

  55. Published

    Case series of severe neurologic sequelae of ebola virus disease during epidemic, Sierra Leone

    Howlett, P. J., Walder, A. R., Lisk, D. R., Fitzgerald, F., Sevalie, S., Lado, M., N’Jai, A., Brown, C. S., Sahr, F., Sesay, F., Read, J. M., Steptoe, P. J., Beare, N. A. V., Dwivedi, R., Solbrig, M., Deen, G. F., Solomon, T., Semple, M. G. & Scott, J. T., 24/08/2018, In: Emerging Infectious Diseases. 24, 8, p. 1412-1421 10 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  56. Published

    Primary Care Influenza-like Illness Surveillance in Ho Chi Minh City, Vietnam 2013-2015

    Todd, S., Huong, N. T. C., Thanh, N. T. L., Vy, N. H. T., Hung, N. T., Thao, T. T. N., Phuong, H. T., van Doorn, H. R., Hang, V. T. T., Chau, N. V. V., Read, J. M., Lalloo, D. G. & Boni, M. F., 09/2018, In: Influenza and Other Respiratory Viruses. 12, 5, p. 623-631 9 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  57. Published

    Prevalence and risk factors of community-associated methicillin-resistant carriage in Asia-Pacific region from 2000 to 2016: a systematic review and meta-analysis

    Wong, J. W., Ip, M., Tang, A., Wei, V. W., Wong, S. Y., Riley, S., Read, J. M. & Kwok, K. O., 12/10/2018, In: Clinical Epidemiology. 10, p. 1489-1501 13 p.

    Research output: Contribution to Journal/Magazine › Review article › peer-review

  58. Published

    Mitigating bias in observational vaccine effectiveness studies using simulated comparator populations: Application to rotavirus vaccination in the UK

    Hungerford, D., Vivancos, R., Read, J. M., Bonnett, L. J., Bar-Zeev, N., Iturriza-Gómara, M., Cunliffe, N. A. & French, N., 29/10/2018, In: Vaccine. 36, 45, p. 6674-6682 9 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  59. Published

    Pneumococcal carriage in households in Karonga District, Malawi, before and after introduction of 13-valent pneumococcal conjugate vaccination

    Heinsbroek, E., Tafatatha, T., Phiri, A., Swarthout, T. D., Alaerts, M., Crampin, A. C., Chisambo, C., Mwiba, O., Read, J. M. & French, N., 19/11/2018, In: Vaccine. 36, 48, p. 7369-7376 8 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  60. Published

    Who interacts with whom? Social mixing insights from a rural population in India

    Kumar, S., Gosain, M., Sharma, H., Swetts, E., Amarchand, R., Kumar, R., Lafond, K. E., Dawood, F. S., Jain, S., Widdowson, M-A., Read, J. M. & Krishnan, A., 21/12/2018, In: PLoS ONE. 13, 12, 17 p., e0209039.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  61. 2019
  62. Published

    Differential mobility and local variation in infection attack rate

    Haw, D. J., Cummings, D. A. T., Lessler, J., Salje, H., Read, J. M. & Riley, S., 22/01/2019, In: PLoS Computational Biology. 15, 1, 16 p., e1006600.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  63. Published

    The use and reporting of airline passenger data for infectious disease modelling: a systematic review

    Meslé, M. MI., Hall, I. M., Christley, R. M., Leach, S. & Read, J., 1/08/2019, In: Eurosurveillance. 24, 31, 18 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  64. Published

    Patterns of human social contact and contact with animals in Shanghai, China

    Zhang, J., Klepac, P., Read, J., Rosello, A., Wang, X., Lai, S., Li, M., Song, Y., Wei, Q., Jiang, H., Yang, J., Lynn, H., Flasche, S., Jit, M. & Yu, H., 22/10/2019, In: Scientific Reports. 9, 11 p., 15141.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  65. Published

    Reduction in hospitalisations for acute gastroenteritis-associated childhood seizures since introduction of rotavirus vaccination: A time-series and change-point analysis of hospital admissions in England

    Hungerford, D. J., French, N., Iturriza-Gómara, M., Read, J. M., Cunliffe, N. A. & Vivancos, R., 1/11/2019, In: Journal of Epidemiology and Community Health. p. 1020-1025 6 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  66. 2020
  67. Published

    Childhood malaria case incidence in Malawi between 2004 and 2017: Spatio-temporal modelling of climate and non-climate factors

    Chirombo, J., Ceccato, P., Lowe, R., Terlouw, D. J., Thomson, M., Gumbo, A., Diggle, P. & Read, J., 6/01/2020, In: Malaria Journal. 19, 13 p., 5.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

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