The interactive effects of the types and contents of soil clay fractions (SCFs) and plant-residue addition rates on soil organic carbon (SOC) stabilisation are largely unknown. We conducted incubation experiments by amending a sandy soil sample with kaolinitic-illitic, smectitic and allophanic SCFs and adding wheat residues to the mineral mixtures to compare their C stabilisation capacity. The rate of carbon (C) decomposition was higher in the kaolinitic-illitic SCF followed by smectitic and allophanic clay minerals. The supply of easily degradable C substrate from decomposing residues markedly influenced the SCFs’ abilities to stabilise SOC. The removal of sesquioxides from the SCFs significantly decreased their C stabilisation capacity, which coincided with a decrease in the dehydrogenase activity of the mineral-residue mixture. The allophanic SCF showed the least microbial activity and the greatest C stabilisation due to having a higher proportion of micropores (75%). The high C stabilisation capacity of allophanic SCF could also be explained by its high specific surface area (119 m² g⁻¹). The results of this study are helpful to understand the role of various SCFs in stabilising added C originating from external wheat residue addition but warrant further validation under field conditions.