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Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite

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Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite. / Moran, Robert F.; McKay, David; Pickard, Chris J. et al.
In: Physical Chemistry Chemical Physics, Vol. 18, No. 15, 21.04.2016, p. 10173-10181.

Research output: Contribution to Journal/MagazineJournal articlepeer-review

Harvard

Moran, RF, McKay, D, Pickard, CJ, Berry, AJ, Griffin, JM & Ashbrook, SE 2016, 'Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite', Physical Chemistry Chemical Physics, vol. 18, no. 15, pp. 10173-10181. https://doi.org/10.1039/c6cp01529h

APA

Moran, R. F., McKay, D., Pickard, C. J., Berry, A. J., Griffin, J. M., & Ashbrook, S. E. (2016). Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite. Physical Chemistry Chemical Physics, 18(15), 10173-10181. https://doi.org/10.1039/c6cp01529h

Vancouver

Moran RF, McKay D, Pickard CJ, Berry AJ, Griffin JM, Ashbrook SE. Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite. Physical Chemistry Chemical Physics. 2016 Apr 21;18(15):10173-10181. Epub 2016 Mar 21. doi: 10.1039/c6cp01529h

Author

Moran, Robert F. ; McKay, David ; Pickard, Chris J. et al. / Hunting for hydrogen : random structure searching and prediction of NMR parameters of hydrous wadsleyite. In: Physical Chemistry Chemical Physics. 2016 ; Vol. 18, No. 15. pp. 10173-10181.

Bibtex

@article{3d747e604b8748e5a082aa958961d0dd,
title = "Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite",
abstract = "The structural chemistry of materials containing low levels of nonstoichiometric hydrogen is difficult to determine, and producing structural models is challenging where hydrogen has no fixed crystallographic site. Here we demonstrate a computational approach employing ab initio random structure searching (AIRSS) to generate a series of candidate structures for hydrous wadsleyite (β-Mg2SiO4 with 1.6 wt% H2O), a high-pressure mineral proposed as a repository for water in the Earth's transition zone. Aligning with previous experimental work, we solely consider models with Mg3 (over Mg1, Mg2 or Si) vacancies. We adapt the AIRSS method by starting with anhydrous wadsleyite, removing a single Mg2+ and randomly placing two H+ in a unit cell model, generating 819 candidate structures. 103 geometries were then subjected to more accurate optimisation under periodic DFT. Using this approach, we find the most favourable hydration mechanism involves protonation of two O1 sites around the Mg3 vacancy. The formation of silanol groups on O3 or O4 sites (with loss of stable O1–H hydroxyls) coincides with an increase in total enthalpy. Importantly, the approach we employ allows observables such as NMR parameters to be computed for each structure. We consider hydrous wadsleyite (∼1.6 wt%) to be dominated by protonated O1 sites, with O3/O4–H silanol groups present as defects, a model that maps well onto experimental studies at higher levels of hydration (J. M. Griffin et al., Chem. Sci., 2013, 4, 1523). The AIRSS approach adopted herein provides the crucial link between atomic-scale structure and experimental studies.",
author = "Moran, {Robert F.} and David McKay and Pickard, {Chris J.} and Berry, {Andrew J.} and Griffin, {John Matthew} and Ashbrook, {Sharon E.}",
year = "2016",
month = apr,
day = "21",
doi = "10.1039/c6cp01529h",
language = "English",
volume = "18",
pages = "10173--10181",
journal = "Physical Chemistry Chemical Physics",
issn = "1463-9076",
publisher = "Royal Society of Chemistry",
number = "15",

}

RIS

TY - JOUR

T1 - Hunting for hydrogen

T2 - random structure searching and prediction of NMR parameters of hydrous wadsleyite

AU - Moran, Robert F.

AU - McKay, David

AU - Pickard, Chris J.

AU - Berry, Andrew J.

AU - Griffin, John Matthew

AU - Ashbrook, Sharon E.

PY - 2016/4/21

Y1 - 2016/4/21

N2 - The structural chemistry of materials containing low levels of nonstoichiometric hydrogen is difficult to determine, and producing structural models is challenging where hydrogen has no fixed crystallographic site. Here we demonstrate a computational approach employing ab initio random structure searching (AIRSS) to generate a series of candidate structures for hydrous wadsleyite (β-Mg2SiO4 with 1.6 wt% H2O), a high-pressure mineral proposed as a repository for water in the Earth's transition zone. Aligning with previous experimental work, we solely consider models with Mg3 (over Mg1, Mg2 or Si) vacancies. We adapt the AIRSS method by starting with anhydrous wadsleyite, removing a single Mg2+ and randomly placing two H+ in a unit cell model, generating 819 candidate structures. 103 geometries were then subjected to more accurate optimisation under periodic DFT. Using this approach, we find the most favourable hydration mechanism involves protonation of two O1 sites around the Mg3 vacancy. The formation of silanol groups on O3 or O4 sites (with loss of stable O1–H hydroxyls) coincides with an increase in total enthalpy. Importantly, the approach we employ allows observables such as NMR parameters to be computed for each structure. We consider hydrous wadsleyite (∼1.6 wt%) to be dominated by protonated O1 sites, with O3/O4–H silanol groups present as defects, a model that maps well onto experimental studies at higher levels of hydration (J. M. Griffin et al., Chem. Sci., 2013, 4, 1523). The AIRSS approach adopted herein provides the crucial link between atomic-scale structure and experimental studies.

AB - The structural chemistry of materials containing low levels of nonstoichiometric hydrogen is difficult to determine, and producing structural models is challenging where hydrogen has no fixed crystallographic site. Here we demonstrate a computational approach employing ab initio random structure searching (AIRSS) to generate a series of candidate structures for hydrous wadsleyite (β-Mg2SiO4 with 1.6 wt% H2O), a high-pressure mineral proposed as a repository for water in the Earth's transition zone. Aligning with previous experimental work, we solely consider models with Mg3 (over Mg1, Mg2 or Si) vacancies. We adapt the AIRSS method by starting with anhydrous wadsleyite, removing a single Mg2+ and randomly placing two H+ in a unit cell model, generating 819 candidate structures. 103 geometries were then subjected to more accurate optimisation under periodic DFT. Using this approach, we find the most favourable hydration mechanism involves protonation of two O1 sites around the Mg3 vacancy. The formation of silanol groups on O3 or O4 sites (with loss of stable O1–H hydroxyls) coincides with an increase in total enthalpy. Importantly, the approach we employ allows observables such as NMR parameters to be computed for each structure. We consider hydrous wadsleyite (∼1.6 wt%) to be dominated by protonated O1 sites, with O3/O4–H silanol groups present as defects, a model that maps well onto experimental studies at higher levels of hydration (J. M. Griffin et al., Chem. Sci., 2013, 4, 1523). The AIRSS approach adopted herein provides the crucial link between atomic-scale structure and experimental studies.

U2 - 10.1039/c6cp01529h

DO - 10.1039/c6cp01529h

M3 - Journal article

VL - 18

SP - 10173

EP - 10181

JO - Physical Chemistry Chemical Physics

JF - Physical Chemistry Chemical Physics

SN - 1463-9076

IS - 15

ER -