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    Rights statement: This is the author’s version of a work that was accepted for publication in Spatial and Spatio-temporal Epidemiology. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. Changes may have been made to this work since it was submitted for publication. A definitive version was subsequently published in Spatial and Spatio-temporal Epidemiology, 19, 2016 DOI: 10.1016/j.sste.2016.10.001

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Modeling of spatio-temporal variation in plague incidence in Madagascar from 1980 to 2007

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Modeling of spatio-temporal variation in plague incidence in Madagascar from 1980 to 2007. / Giorgi, Emanuele; Kreppel, Katharina; Diggle, Peter John; Caminade, Cyril; Ratsitorahina, Maherisoa; Rajerison, Minoarisoa; Baylis, Matthew.

In: Spatial and Spatio-temporal Epidemiology, Vol. 19, 11.2016, p. 125-135.

Research output: Contribution to journalJournal articlepeer-review

Harvard

Giorgi, E, Kreppel, K, Diggle, PJ, Caminade, C, Ratsitorahina, M, Rajerison, M & Baylis, M 2016, 'Modeling of spatio-temporal variation in plague incidence in Madagascar from 1980 to 2007', Spatial and Spatio-temporal Epidemiology, vol. 19, pp. 125-135. https://doi.org/10.1016/j.sste.2016.10.001

APA

Giorgi, E., Kreppel, K., Diggle, P. J., Caminade, C., Ratsitorahina, M., Rajerison, M., & Baylis, M. (2016). Modeling of spatio-temporal variation in plague incidence in Madagascar from 1980 to 2007. Spatial and Spatio-temporal Epidemiology, 19, 125-135. https://doi.org/10.1016/j.sste.2016.10.001

Vancouver

Giorgi E, Kreppel K, Diggle PJ, Caminade C, Ratsitorahina M, Rajerison M et al. Modeling of spatio-temporal variation in plague incidence in Madagascar from 1980 to 2007. Spatial and Spatio-temporal Epidemiology. 2016 Nov;19:125-135. https://doi.org/10.1016/j.sste.2016.10.001

Author

Giorgi, Emanuele ; Kreppel, Katharina ; Diggle, Peter John ; Caminade, Cyril ; Ratsitorahina, Maherisoa ; Rajerison, Minoarisoa ; Baylis, Matthew. / Modeling of spatio-temporal variation in plague incidence in Madagascar from 1980 to 2007. In: Spatial and Spatio-temporal Epidemiology. 2016 ; Vol. 19. pp. 125-135.

Bibtex

@article{b3c4fbc73b184fac8b3d51b2a4184593,
title = "Modeling of spatio-temporal variation in plague incidence in Madagascar from 1980 to 2007",
abstract = "Plague is an infectious disease caused by the bacterium Yersinia pestis, which, during the fourteenth century, caused the deaths of an estimated 75–200 million people in Europe. Plague epidemics still occur in Africa, Asia and South America. Madagascar is today one of the most endemic countries, reporting nearly one third of the human cases worldwide from 2004 to 2009. The persistence of plague in Madagascar is associated with environmental and climatic conditions. In this paper we present a case study of the spatio-temporal analysis of plague incidence in Madagascar from 1980 to 2007. We study the relationship of plague with temperature and precipitation anomalies, and with elevation. A joint spatio-temporal analysis of the data proves to be computationally intractable. We therefore develop a spatio-temporal log-Gaussian Cox process model, but then carry out marginal temporal and spatial analyses. We also introduce a spatially discrete approximation for Gaussian processes, whose parameters retain a spatially continuous interpretation. We find evidence of a cumulative effect, over time, of temperature anomalies on plague incidence, and of a very high relative risk of plague occurrence for locations above 800 m in elevation. Our approach provides a useful modeling framework to assess the relationship between exposures and plague risk, irrespective of the spatial resolution at which the latter has been recorded.",
keywords = "Cox process, Distributed lag-model, Gaussian process, Plague, Spatio-temporal point pattern",
author = "Emanuele Giorgi and Katharina Kreppel and Diggle, {Peter John} and Cyril Caminade and Maherisoa Ratsitorahina and Minoarisoa Rajerison and Matthew Baylis",
note = "This is the author{\textquoteright}s version of a work that was accepted for publication in Spatial and Spatio-temporal Epidemiology. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. Changes may have been made to this work since it was submitted for publication. A definitive version was subsequently published in Spatial and Spatio-temporal Epidemiology, 19, 2016 DOI: 10.1016/j.sste.2016.10.001",
year = "2016",
month = nov,
doi = "10.1016/j.sste.2016.10.001",
language = "English",
volume = "19",
pages = "125--135",
journal = "Spatial and Spatio-temporal Epidemiology",
issn = "1877-5845",
publisher = "Elsevier Ltd",

}

RIS

TY - JOUR

T1 - Modeling of spatio-temporal variation in plague incidence in Madagascar from 1980 to 2007

AU - Giorgi, Emanuele

AU - Kreppel, Katharina

AU - Diggle, Peter John

AU - Caminade, Cyril

AU - Ratsitorahina, Maherisoa

AU - Rajerison, Minoarisoa

AU - Baylis, Matthew

N1 - This is the author’s version of a work that was accepted for publication in Spatial and Spatio-temporal Epidemiology. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. Changes may have been made to this work since it was submitted for publication. A definitive version was subsequently published in Spatial and Spatio-temporal Epidemiology, 19, 2016 DOI: 10.1016/j.sste.2016.10.001

PY - 2016/11

Y1 - 2016/11

N2 - Plague is an infectious disease caused by the bacterium Yersinia pestis, which, during the fourteenth century, caused the deaths of an estimated 75–200 million people in Europe. Plague epidemics still occur in Africa, Asia and South America. Madagascar is today one of the most endemic countries, reporting nearly one third of the human cases worldwide from 2004 to 2009. The persistence of plague in Madagascar is associated with environmental and climatic conditions. In this paper we present a case study of the spatio-temporal analysis of plague incidence in Madagascar from 1980 to 2007. We study the relationship of plague with temperature and precipitation anomalies, and with elevation. A joint spatio-temporal analysis of the data proves to be computationally intractable. We therefore develop a spatio-temporal log-Gaussian Cox process model, but then carry out marginal temporal and spatial analyses. We also introduce a spatially discrete approximation for Gaussian processes, whose parameters retain a spatially continuous interpretation. We find evidence of a cumulative effect, over time, of temperature anomalies on plague incidence, and of a very high relative risk of plague occurrence for locations above 800 m in elevation. Our approach provides a useful modeling framework to assess the relationship between exposures and plague risk, irrespective of the spatial resolution at which the latter has been recorded.

AB - Plague is an infectious disease caused by the bacterium Yersinia pestis, which, during the fourteenth century, caused the deaths of an estimated 75–200 million people in Europe. Plague epidemics still occur in Africa, Asia and South America. Madagascar is today one of the most endemic countries, reporting nearly one third of the human cases worldwide from 2004 to 2009. The persistence of plague in Madagascar is associated with environmental and climatic conditions. In this paper we present a case study of the spatio-temporal analysis of plague incidence in Madagascar from 1980 to 2007. We study the relationship of plague with temperature and precipitation anomalies, and with elevation. A joint spatio-temporal analysis of the data proves to be computationally intractable. We therefore develop a spatio-temporal log-Gaussian Cox process model, but then carry out marginal temporal and spatial analyses. We also introduce a spatially discrete approximation for Gaussian processes, whose parameters retain a spatially continuous interpretation. We find evidence of a cumulative effect, over time, of temperature anomalies on plague incidence, and of a very high relative risk of plague occurrence for locations above 800 m in elevation. Our approach provides a useful modeling framework to assess the relationship between exposures and plague risk, irrespective of the spatial resolution at which the latter has been recorded.

KW - Cox process

KW - Distributed lag-model

KW - Gaussian process

KW - Plague

KW - Spatio-temporal point pattern

U2 - 10.1016/j.sste.2016.10.001

DO - 10.1016/j.sste.2016.10.001

M3 - Journal article

VL - 19

SP - 125

EP - 135

JO - Spatial and Spatio-temporal Epidemiology

JF - Spatial and Spatio-temporal Epidemiology

SN - 1877-5845

ER -