Home > Research > Publications & Outputs > Nasopharyngeal metagenomic deep sequencing data...

Research

Associated organisational units

Links

Text available via DOI:

Keywords

View graph of relations

Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014-2015

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Published

Standard

Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014-2015. / Atkinson, Kate V.; Bishop, Lisa A.; Rhodes, Glenn et al.
In: Scientific Data, Vol. 4, 170161, 24.10.2017.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Harvard

Atkinson, KV, Bishop, LA, Rhodes, G, Salez, N, McEwan, NR, Hegarty, MJ, Robey, J, Harding, N, Wetherell, S, Lauder, RM, Pickup, RW, Wilkinson, M & Gatherer, D 2017, 'Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014-2015', Scientific Data, vol. 4, 170161. https://doi.org/10.1038/sdata.2017.161

APA

Atkinson, K. V., Bishop, L. A., Rhodes, G., Salez, N., McEwan, N. R., Hegarty, M. J., Robey, J., Harding, N., Wetherell, S., Lauder, R. M., Pickup, R. W., Wilkinson, M., & Gatherer, D. (2017). Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014-2015. Scientific Data, 4, Article 170161. https://doi.org/10.1038/sdata.2017.161

Vancouver

Atkinson KV, Bishop LA, Rhodes G, Salez N, McEwan NR, Hegarty MJ et al. Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014-2015. Scientific Data. 2017 Oct 24;4:170161. doi: 10.1038/sdata.2017.161

Author

Atkinson, Kate V. ; Bishop, Lisa A. ; Rhodes, Glenn et al. / Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014-2015. In: Scientific Data. 2017 ; Vol. 4.

Bibtex

@article{a8f19a08b0ac4c8baad022d6821968f2,
title = "Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014-2015",
abstract = "Nasopharyngeal swabs were taken from volunteers attending a general medical practice and a general hospital in Lancaster, UK, and at Lancaster University, in the winter of 2014-2015. 51 swabs were selected based on high RNA yield and allocated to deep sequencing pools as follows: patients with chronic obstructive pulmonary disease; asthmatics; adults with no respiratory symptoms; adults with feverish respiratory symptoms; adults with respiratory symptoms and presence of antibodies against influenza C; paediatric patients with respiratory symptoms (2 pools); adults with influenza C infection (2 pools), giving a total of 9 pools. Illumina sequencing was performed, with data yields per pool in the range of 345.6 megabases to 14 gigabases after removal of reads aligning to the human genome. The data were deposited in the Sequence Read Archive at NCBI, and constitute a resource for study of the viral, bacterial and fungal metagenome of the human nasopharynx in healthy and diseased states and comparison with other metagenomic studies on the human respiratory tract.",
keywords = "nasopharyngeal metagenomes, metagenomics, respiratory metagenomics, deep sequencing, viruses, bioinformatics",
author = "Atkinson, {Kate V.} and Bishop, {Lisa A.} and Glenn Rhodes and Nicolas Salez and McEwan, {Neil R.} and Hegarty, {Matthew J.} and Julie Robey and Nicola Harding and Simon Wetherell and Lauder, {Robert M.} and Pickup, {Roger W.} and Mark Wilkinson and Derek Gatherer",
year = "2017",
month = oct,
day = "24",
doi = "10.1038/sdata.2017.161",
language = "English",
volume = "4",
journal = "Scientific Data",
issn = "2052-4463",
publisher = "Nature Publishing Group",

}

RIS

TY - JOUR

T1 - Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014-2015

AU - Atkinson, Kate V.

AU - Bishop, Lisa A.

AU - Rhodes, Glenn

AU - Salez, Nicolas

AU - McEwan, Neil R.

AU - Hegarty, Matthew J.

AU - Robey, Julie

AU - Harding, Nicola

AU - Wetherell, Simon

AU - Lauder, Robert M.

AU - Pickup, Roger W.

AU - Wilkinson, Mark

AU - Gatherer, Derek

PY - 2017/10/24

Y1 - 2017/10/24

N2 - Nasopharyngeal swabs were taken from volunteers attending a general medical practice and a general hospital in Lancaster, UK, and at Lancaster University, in the winter of 2014-2015. 51 swabs were selected based on high RNA yield and allocated to deep sequencing pools as follows: patients with chronic obstructive pulmonary disease; asthmatics; adults with no respiratory symptoms; adults with feverish respiratory symptoms; adults with respiratory symptoms and presence of antibodies against influenza C; paediatric patients with respiratory symptoms (2 pools); adults with influenza C infection (2 pools), giving a total of 9 pools. Illumina sequencing was performed, with data yields per pool in the range of 345.6 megabases to 14 gigabases after removal of reads aligning to the human genome. The data were deposited in the Sequence Read Archive at NCBI, and constitute a resource for study of the viral, bacterial and fungal metagenome of the human nasopharynx in healthy and diseased states and comparison with other metagenomic studies on the human respiratory tract.

AB - Nasopharyngeal swabs were taken from volunteers attending a general medical practice and a general hospital in Lancaster, UK, and at Lancaster University, in the winter of 2014-2015. 51 swabs were selected based on high RNA yield and allocated to deep sequencing pools as follows: patients with chronic obstructive pulmonary disease; asthmatics; adults with no respiratory symptoms; adults with feverish respiratory symptoms; adults with respiratory symptoms and presence of antibodies against influenza C; paediatric patients with respiratory symptoms (2 pools); adults with influenza C infection (2 pools), giving a total of 9 pools. Illumina sequencing was performed, with data yields per pool in the range of 345.6 megabases to 14 gigabases after removal of reads aligning to the human genome. The data were deposited in the Sequence Read Archive at NCBI, and constitute a resource for study of the viral, bacterial and fungal metagenome of the human nasopharynx in healthy and diseased states and comparison with other metagenomic studies on the human respiratory tract.

KW - nasopharyngeal metagenomes

KW - metagenomics

KW - respiratory metagenomics

KW - deep sequencing

KW - viruses

KW - bioinformatics

U2 - 10.1038/sdata.2017.161

DO - 10.1038/sdata.2017.161

M3 - Journal article

C2 - 29064471

VL - 4

JO - Scientific Data

JF - Scientific Data

SN - 2052-4463

M1 - 170161

ER -