A state-space perspective on modelling and inference for online skill rating

Duffield, S., Power, S. & Rimella, L., 30/11/2024, In: Journal of the Royal Statistical Society: Series C (Applied Statistics). 73, 5, p. 1262-1282 21 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Scalable couplings for the random walk Metropolis algorithm

Papp, T. & Sherlock, C., 6/11/2024, (Accepted/In press) In: Journal of the Royal Statistical Society: Series B (Statistical Methodology).

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Markovian Flow Matching: Accelerating MCMC with Continuous Normalizing Flows

Cabezas Gonzalez, A., Sharrock, L. & Nemeth, C., 25/09/2024, (Accepted/In press) In: Advances in Neural Information Processing Systems.

Research output: Contribution to Journal/Magazine › Conference article › peer-review

Sequential Neural Score Estimation: Likelihood-Free Inference with Conditional Score Based Diffusion Models

Sharrock, L., Simons, J., Liu, S. & Beaumont, M., 29/07/2024, In: Proceedings of Machine Learning Research. 235, p. 44565-44602 38 p.

Research output: Contribution to Journal/Magazine › Conference article › peer-review

Tuning-Free Maximum Likelihood Training of Latent Variable Models via Coin Betting

Sharrock, L., Dodd, D. & Nemeth, C., 19/07/2024, In: Proceedings of Machine Learning Research. 238, p. 1810-1818 9 p.

Research output: Contribution to Journal/Magazine › Conference article › peer-review

Robust Bayesian nonparametric variable selection for linear regression

Cabezas, A., Battiston, M. & Nemeth, C., 27/05/2024, In: Stat. 13, 2, e696.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Learning-Rate-Free Stochastic Optimization over Riemannian Manifolds

Dodd, D., Sharrock, L. & Nemeth, C., 1/05/2024, (Accepted/In press) In: Proceedings of Machine Learning Research.

Research output: Contribution to Journal/Magazine › Conference article › peer-review

SwISS: A Scalable Markov chain Monte Carlo Divide-and-Conquer Strategy

Vyner, C., Nemeth, C. & Sherlock, C., 31/12/2023, In: Stat. 12, 1, 11 p., e523.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Inference on extended-spectrum beta-lactamase Escherichia coli and Klebsiella pneumoniae data through SMC2

Rimella, L., Alderton, S., Sammarro, M., Rowlingson, B., Cocker, D., Feasey, N., Fearnhead, P. & Jewell, C., 30/11/2023, In: Journal of the Royal Statistical Society: Series C (Applied Statistics). 72, 5, p. 1435–1451

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Latent Space Modelling of Hypergraph Data

Turnbull, K., Lunagomez, S., Nemeth, C. & Airoldi, E., 23/10/2023, (E-pub ahead of print) In: Journal of the American Statistical Association.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Concave-Convex PDMP-based sampling

Sutton, M. & Fearnhead, P., 2/10/2023, In: Journal of Computational and Graphical Statistics. 32, 4, 22 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Learning Rate Free Bayesian Inference in Constrained Domains

Sharrock, L., Mackey, L. & Nemeth, C., 21/09/2023, (Accepted/In press) In: Advances in Neural Information Processing Systems. 37

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Bayesian additive regression trees for genotype by environment interaction models

Sarti, D., Batista Do Prado, E., Inglis, A., Lemos dos Santos, A., Hurley, C., de Andrade Moral, R. & Parnell, A. C., 1/09/2023, In: Annals of Applied Statistics. 17, 3, p. 1936-1957 22 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Modelling the age-prevalence relationship in schistosomiasis: A secondary data analysis of school-aged-children in Mangochi District, Lake Malawi.

Reed, A., O'Ferrall, A., Kayuni, S., Baxter, H., Stanton, M., Stothard, J. R. & Jewell, C., 31/08/2023, In: Parasite epidemiology and control. 22, e00303.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Online parameter estimation for the McKean–Vlasov stochastic differential equation

Sharrock, L., Kantas, N., Parpas, P. & Pavliotis, G. A., 31/08/2023, In: Stochastic Processes and their Applications. 162, p. 481-546 66 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Investigating One Health risks for human colonisation with extended spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae in Malawian households: a longitudinal cohort study

Cocker, D., Chidziwisano, K., Mphasa, M., Mwapasa, T., Lewis, J. M., Rowlingson, B., Sammarro, M., Bakali, W., Salifu, C., Zuza, A., Charles, M., Mandula, T., Maiden, V., Amos, S., Jacob, S. T., Kajumbula, H., Mugisha, L., Musoke, D., Byrne, R. & Edwards, T. & 7 others, Lester, R., Elviss, N., Roberts, A. P., Singer, A. C., Jewell, C., Morse, T. & Feasey, N. A., 31/07/2023, In: The Lancet. Microbe. 4, 7, p. e534-e543 10 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Reversible Jump PDMP Samplers for Variable Selection

Chevallier, A., Fearnhead, P. & Sutton, M., 31/07/2023, In: Journal of the American Statistical Association. 118, 544, p. 2915-2927

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Coin Sampling: Gradient-Based Bayesian Inference without Learning Rates

Sharrock, L. & Nemeth, C., 23/07/2023, In: Proceedings of Machine Learning Research. 202, p. 30850-30882 33 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Risk Factors, Temporal Dependence, and Seasonality of Human extended-spectrum β-lactamases-producing<i>Escherichia coli</i>and<i>Klebsiella pneumoniae</i>Colonization in Malawi: A Longitudinal Model-based Approach

Sammarro, M., Rowlingson, B., Cocker, D., Chidziwisano, K., Jacob, S. T., Kajumbula, H., Mugisha, L., Musoke, D., Lester, R., Morse, T., Feasey, N. & Jewell, C., 5/07/2023, In: Clinical Infectious Diseases. 77, 1, p. 1-8 8 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Contact patterns of UK home delivery drivers and their use of protective measures during the COVID-19 pandemic: a cross-sectional study

Bridgen, J. R. E., Wei, H., Whitfield, C., Han, Y., Hall, I., Jewell, C. P., van Tongeren, M. J. A. & Read, J. M., 30/06/2023, In: Occupational and Environmental Medicine. 80, 6, p. 333-338 6 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Hug and Hop: a discrete-time, nonreversible Markov chain Monte Carlo algorithm

Ludkin, M. & Sherlock, C., 30/06/2023, In: Biometrika. 110, 2, p. 301-318 18 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Individual and population level costs and health-related quality of life outcomes of third-generation cephalosporin resistant bloodstream infection in Blantyre, Malawi

Lester, R., Mango, J., Mallewa, J., Jewell, C. P., Lalloo, D. A., Feasey, N. A., Maheswaran, H. & Muniyandi, M. (Editor), 22/06/2023, In: PLOS Global Public Health. 3, 6, e0001589.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Stochastic Gradient MCMC for Nonlinear State Space Models

Aicher, C., Putcha, S., Nemeth, C., Fearnhead, P. & Fox, E. B., 8/06/2023, (Accepted/In press) In: Bayesian Analysis.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Air Pollution Exposure Among Adult Chronic Airway Disease Patients in the Gambia: A Pilot Case-control Study

Awokola, B. I., Mohammed, N., Okello, G., Johnson, O., Jatta, M. L., Susso, M., Gibba, A., Ndow, P., Awokola, E., Amusa, G. A., Jewell, C. P., Devereux, G., Mortimer, K. J. & Erhart, A., 1/05/2023, In: American Journal of Respiratory and Critical Care Medicine. 207, 1 p.

Research output: Contribution to Journal/Magazine › Meeting abstract › peer-review

Sequential Estimation of Temporally Evolving Latent Space Network Models

Turnbull, K., Nemeth, C., Nunes, M. & McCormick, T., 31/03/2023, In: Computational Statistics and Data Analysis. 179, 107627.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Exact Bayesian inference for discretely observed Markov Jump Processes using finite rate matrices

Sherlock, C. & Golightly, A., 31/01/2023, In: Journal of Computational and Graphical Statistics. 32, 1, p. 36-48 13 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Bayesian multi-species N-mixture models for unmarked animal communities

Mimnagh, N., Parnell, A. C., Batista Do Prado, E. & de Andrade Moral, R., 31/12/2022, In: Environmental and Ecological Statistics. 29, p. 755-778 24 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Effect of resistance to third-generation cephalosporins on morbidity and mortality from bloodstream infections in Blantyre, Malawi: a prospective cohort study

Lester, R., Musicha, P., Kawaza, K., Langton, J., Mango, J., Mangochi, H., Bakali, W., Pearse, O., Mallewa, J., Denis, B., Bilima, S., Gordon, S. B., Lalloo, D. G., Jewell, C. P. & Feasey, N. A., 31/12/2022, In: The Lancet. Microbe. 3, 12, p. e922-e930 9 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Social mixing patterns in the UK following the relaxation of COVID-19 pandemic restrictions, July to August 2020: a cross-sectional online survey

Bridgen, J., Jewell, C. & Read, J., 13/12/2022, In: BMJ Open. 12, 12, 8 p., e059231.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Colonization dynamics of extended-spectrum beta-lactamase-producing Enterobacterales in the gut of Malawian adults

Lewis, J. M., Mphasa, M., Banda, R., Beale, M. A., Heinz, E., Mallewa, J., Jewell, C., Faragher, B., Thomson, N. R. & Feasey, N. A., 31/10/2022, In: Nature Microbiology. 7, 10, p. 1593-1604 12 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Hospitalisation and mortality risk of SARS-COV-2 variant omicron sub-lineage BA.2 compared to BA.1 in England

Webster, H. H., Nyberg, T., Sinnathamby, M. A., Aziz, N. A., Ferguson, N., Seghezzo, G., Blomquist, P. B., Bridgen, J., Chand, M., Groves, N., Myers, R., Hope, R., Ashano, E., Lopez-Bernal, J., De Angelis, D., Dabrera, G., Presanis, A. M. & Thelwall, S., 13/10/2022, In: Nature Communications. 13, 1, 6 p., 6053.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Variance bounding of delayed-acceptance kernels

Sherlock, C. & Lee, A., 30/09/2022, In: Methodology and Computing in Applied Probability. 24, 3, p. 2237-2260 24 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Longitudinal Ambient PM 2.5 Measurement at Fifteen Locations in Eight Sub-Saharan African Countries Using Low-Cost Sensors

Awokola, B., Okello, G., Johnson, O., Dobson, R., Ouédraogo, A. R., Dibba, B., Ngahane, M., Ndukwu, C., Agunwa, C., Marangu, D., Lawin, H., Ogugua, I., Eze, J., Nwosu, N., Ofiaeli, O., Ubuane, P., Osman, R., Awokola, E., Erhart, A. & Mortimer, K. & 3 others, Jewell, C., Semple, S. & Suriano, D. (Editor), 29/09/2022, (E-pub ahead of print) In: Atmosphere. 13, 10, 16 p., 1593.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Continuously-Tempered PDMP samplers

Sutton, M., Salomone, R., Chevallier, A. & Fearnhead, P., 14/09/2022, (Accepted/In press) In: Advances in Neural Information Processing Systems. 35, 28293--28304

Research output: Contribution to Journal/Magazine › Journal article › peer-review

EpiBeds: Data informed modelling of the COVID-19 hospital burden in England

Overton, C. E., Pellis, L., Stage, H. B., Scarabel, F., Burton, J., Fraser, C., Hall, I., House, T. A., Jewell, C., Nurtay, A., Pagani, F., Lythgoe, K. A. & Struchiner, C. J. (Editor), 6/09/2022, In: PLoS Computational Biology. 18, 9, 20 p., e1010406.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Impact of intensified control on visceral leishmaniasis in a highly-endemic district of Bihar, India: an interrupted time series analysis

Kumar, V., Siddiqui, N. A., Pollington, T. M., Mandal, R., Das, S., Kesari, S., Das, V. R., Pandey, K., Hollingsworth, T. D., Chapman, L. A. C. & Das, P., 30/06/2022, In: Epidemics. 39, 8 p., 100562.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Semi-Exact Control Functionals From Sard's Method

South, L., Karvonen, T., Nemeth, C., Girolami, M. & Oates, C. J., 30/06/2022, In: Biometrika. 109, 2, p. 351-367 17 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

A discrete bouncy particle sampler

Sherlock, C. & Thiery, A., 1/06/2022, In: Biometrika. 109, 2, p. 335-349 15 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Measuring Air Quality for Advocacy in Africa (MA3): Ambient PM_2.5 Concentrations Over One-Year in 15 Locations in Eight Sub-Saharan African Countries Using Low-Cost Sensors

Awokola, B. I., Okello, G., Dobson, R., Amusa, G. A., Johnson, O., Erhart, A., Mortimer, K., Jewell, C., Semple, S. & MA3 Study Group, 2/05/2022, In: American Journal of Respiratory and Critical Care Medicine. 205, 2 p., A5170.

Research output: Contribution to Journal/Magazine › Conference article › peer-review

GaussianProcesses.jl: A Nonparametric Bayes package for the Julia Language

Fairbrother, J., Nemeth, C., Pinder, T., Rischard, M. & Brea, J., 30/04/2022, In: Journal of Statistical Software. 102, 1, p. 1-36 36 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Interim recruitment prediction for multi-centre clinical trials

Urbas, S. & Sherlock, C., 30/04/2022, In: Biostatistics. 23, 2, p. 485-506 22 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

SGMCMCJax: a lightweight JAX library for stochastic gradient Markov chain Monte Carlo algorithms

Coullon, J. & Nemeth, C., 18/04/2022, In: Journal of Open Source Software. 7, 72, 2 p., 4113.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Influence of sex, season and environmental air quality on experimental human pneumococcal carriage acquisition: a retrospective cohort analysis

Cheliotis, K. S., Jewell, C. P., Solórzano, C., Urban, B., Collins, A. M., Mitsi, E., Pojar, S., Nikolaou, E., German, E. L., Reiné, J., Gordon, S. B., Jochems, S. P., Rylance, J. & Ferreira, D. M., 11/04/2022, In: ERJ open research. 8, 2, 10 p., 00586-2021.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Efficient computation of the volume of a polytope in high-dimensions using Piecewise Deterministic Markov Processes

Chevallier, A., Cazals, F. & Fearnhead, P., 28/03/2022, In: Proceedings of Machine Learning Research. 151, p. 10146-10160 15 p.

Research output: Contribution to Journal/Magazine › Conference article › peer-review

Enhancing epidemiological surveillance of the emergence of the SARS-CoV-2 Omicron variant using spike gene target failure data, England, 15 November to 31 December 2021

Blomquist, P. B., Bridgen, J., Bray, N., O’Connell, A. M., West, D., Groves, N., Gallagher, E., Utsi, L., Jarvis, C. I., Hardstaff, J. L., Byers, C., Metelmann, S., Simons, D., Zaidi, A., Twohig, K. A., Savagar, B., Løchen, A., Wrenn, K., Saavedra-Campos, M. & Abedin, Z. & 5 others, Florence, I., Cleary, P., Elson, R., Vivancos, R. & Lake, I. R., 17/03/2022, In: Eurosurveillance. 27, 11, 5 p., 2200143.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Chronic obstructive pulmonary disease in sub-Saharan Africa

Awokola, B. I., Amusa, G. A., Jewell, C. P., Okello, G., Stobrink, M., Finney, L. J., Mohammed, N., Erhart, A. & Mortimer, K. J., 1/03/2022, In: International Journal of Tuberculosis and Lung Disease. 26, 3, p. 232-242 11 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Risk factor targeting for vaccine prioritization during the COVID-19 pandemic

Chapman, L. A. C., Shukla, P., Rodríguez-Barraquer, I., Shete, P. B., León, T. M., Bibbins-Domingo, K., Rutherford, G. W., Schechter, R. & Lo, N. C., 23/02/2022, In: Scientific Reports. 12, 12 p., 3055.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Augmented pseudo-marginal Metropolis-Hastings for partially observed diffusion processes

Golightly, A. & Sherlock, C., 15/02/2022, In: Statistics and Computing. 32, 18 p., 21.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Drivers of Resistance in Uganda and Malawi (DRUM): a protocol for the evaluation of One-Health drivers of Extended Spectrum Beta Lactamase (ESBL) resistance in Low-Middle Income Countries (LMICs)

Cocker, D., Sammarro, M., Chidziwisano, K., Elviss, N., Jacob, S. T., Kajumbula, H., Mugisha, L., Musoke, D., Musicha, P., Roberts, A. P., Rowlingson, B., Singer, A. C., Byrne, R. L., Edwards, T., Lester, R., Wilson, C., Hollihead, B., Thomson, N., Jewell, C. P. & Morse, T. & 1 others, Feasey, N., 15/02/2022, (E-pub ahead of print) In: Wellcome Open Research. 7, 13 p., 55.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Innovative and Additive Outlier Robust Kalman Filtering with a Robust Particle Filter

Fisch, A., Eckley, I. & Fearnhead, P., 31/01/2022, In: IEEE Transactions on Signal Processing. 70, p. 47-56 10 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Unexposed populations and potential COVID-19 hospitalisations and deaths in European countries as per data up to 21 November 2021

Chapman, L. A. C., Barnard, R. C., Russell, T. W., Abbott, S., Zandvoort, K. V., Davies, N. G. & Kucharski, A. J., 6/01/2022, In: Eurosurveillance. 27, 1, 8 p., 2101038.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Direct statistical inference for finite Markov jump processes via the matrix exponential

Sherlock, C., 31/12/2021, In: Computational Statistics. 36, 4, p. 2863-2887 25 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Trends, relationships and case attribution of antibiotic resistance between children and environmental sources in rural India

Mitchell, J., Purohit, M., Jewell, C. P., Read, J. M., Marrone, G., Diwan, V. & Stålsby Lundborg, C., 19/11/2021, In: Scientific Reports. 11, 1, 11 p., 22599.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Frequency of Routine Testing for Coronavirus Disease 2019 (COVID-19) in High-risk Healthcare Environments to Reduce Outbreaks

Chin, E. T., Huynh, B. Q., Chapman, L. A. C., Murrill, M., Basu, S. & Lo, N. C., 1/11/2021, In: Clinical Infectious Diseases. 73, 9, p. E3127-E3129 3 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Synergistic interventions to control COVID-19: Mass testing and isolation mitigates reliance on distancing

Howerton, E., Ferrari, M. J., Bjørnstad, O. N., Bogich, T. L., Borchering, R. K., Jewell, C. P., Nichols, J. D., Probert, W. J. M., Runge, M. C., Tildesley, M. J., Viboud, C. & Shea, K., 28/10/2021, In: PLoS Computational Biology. 17, 10, 19 p., e1009518.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Tuberculosis in badgers where the bovine tuberculosis epidemic is expanding in cattle in England

Swift, B. M. C., Barron, E. S., Christley, R., Corbetta, D., Grau-Roma, L., Jewell, C., O’Cathail, C., Mitchell, A., Phoenix, J., Prosser, A., Rees, C., Sorley, M., Verin, R. & Bennett, M., 25/10/2021, In: Scientific Reports. 11, 1, 10 p., 20995.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Efficiency of delayed-acceptance random walk Metropolis algorithms

Sherlock, C., Thiery, A. & Golightly, A., 15/10/2021, In: Annals of Statistics. 49, 5, p. 2972-2990 19 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Routine asymptomatic testing strategies for airline travel during the COVID-19 pandemic: a simulation study

Kiang, M. V., Chin, E. T., Huynh, B. Q., Chapman, L. A. C., Rodríguez-Barraquer, I., Greenhouse, B., Rutherford, G. W., Bibbins-Domingo, K., Havlir, D., Basu, S. & Lo, N. C., 31/07/2021, In: The Lancet Infectious Diseases. 21, 7, p. 929-938 10 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Novel coronavirus 2019-nCoV (COVID-19): Early estimation of epidemiological parameters and epidemic size estimates

Read, J. M., Bridgen, J. R. E., Cummings, D. A. T., Ho, A. & Jewell, C. P., 19/07/2021, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 376, 1829, 9 p., 20200265.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Modelling the impact of respiratory syncytial virus (RSV) vaccine and immunoprophylaxis strategies in New Zealand

Prasad, N., Read, J. M., Jewell, C., Waite, B., Trenholme, A. A., Huang, Q. S., Grant, C. C., Newbern, E. C. & Hogan, A. B., 13/07/2021, In: Vaccine. 39, 31, p. 4383-4390 8 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Pan-African evolution of within- And between-country COVID-19 dynamics

Ssentongo, P., Fronterre, C., Geronimo, A., Greybush, S. J., Mbabazi, P. K., Muvawala, J., Nahalamba, S. B., Omadi, P. O., Opar, B. T., Sinnar, S. A., Wang, Y., Whalen, A. J., Held, L., Jewell, C., Muwanguzi, A. J. B., Greatrex, H., Norton, M. M., Diggle, P. J. & Schiff, S. J., 13/07/2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 28, 10 p., e2026664118.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Strategic testing approaches for targeted disease monitoring can be used to inform pandemic decision-making

Nichols, J. D., Bogich, T. L., Howerton, E., Bjørnstad, O. N., Borchering, R. K., Ferrari, M., Haran, M., Jewell, C., Pepin, K. M., Probert, W. J. M., Pulliam, J. R. C., Runge, M. C., Tildesley, M., Viboud, C. & Shea, K., 17/06/2021, In: Plos Biology. 19, 6, 9 p., e3001307.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

An enhanced care package to improve asthma management in Malawian children: A randomised controlled trial

Rylance, S., Chinoko, B., Mnesa, B., Jewell, C., Grigg, J. & Mortimer, K., 31/05/2021, In: Thorax. 76, 5, p. 434-440 7 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Comparison of infection control strategies to reduce COVID-19 outbreaks in homeless shelters in the United States: a simulation study

Chapman, L. A. C., Kushel, M., Cox, S. N., Scarborough, A., Cawley, C., Nguyen, T. Q., Rodriguez-Barraquer, I., Greenhouse, B., Imbert, E. & Lo, N. C., 7/05/2021, In: BMC Medicine. 19, 13 p., 116.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Developments in statistical inference when assessing spatiotemporal disease clustering with the tau statistic

Pollington, T. M., Tildesley, M. J., Hollingsworth, T. D. & Chapman, L. A. C., 30/04/2021, In: Spatial Statistics. 42, 15 p., 100438.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Stochastic gradient Markov chain Monte Carlo

Nemeth, C. & Fearnhead, P., 30/03/2021, In: Journal of the American Statistical Association. 1116, 533, p. 433-450 18 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Bayesian additive regression trees with model trees

Batista Do Prado, E., Parnell, A. C. & de Andrade Moral, R., 3/03/2021, In: Statistics and Computing. 31, 3, p. 1-13 13 p., 20.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Outbreak of severe vomiting in dogs associated with a canine enteric coronavirus, United Kingdom

Radford, A. D., Singleton, D. A., Jewell, C., Appleton, C., Rowlingson, B., Hale, A. C., Cuartero, C. T., Newton, R., Sánchez-Vizcaíno, F., Greenberg, D., Brant, B., Bentley, E. G., Stewart, J. P., Smith, S., Haldenby, S., Noble, P.-J. & Pinchbeck, G. L., 1/02/2021, In: Emerging Infectious Diseases. 27, 2, p. 517-528 12 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Anticipating future learning affects current control decisions: A comparison between passive and active adaptive management in an epidemiological setting

Atkins, B. D., Jewell, C. P., Runge, M. C., Ferrari, M. J., Shea, K., Probert, W. J. M. & Tildesley, M. J., 7/12/2020, In: Journal of Theoretical Biology. 506, 23 p., 110380.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Quasi-stationary Monte Carlo and the ScaLE Algorithm

Pollock, M., Fearnhead, P., Johansen, A. M. & Roberts, G. O., 1/12/2020, In: Journal of the Royal Statistical Society: Series B (Statistical Methodology). 82, 5, p. 1167-1221 55 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Inferring transmission trees to guide targeting of interventions against visceral leishmaniasis and post-kala-azar dermal leishmaniasis

Chapman, L. A. C., Spencer, S. E. F., Pollington, T. M., Jewell, C. P., Mondal, D., Alvar, J., Hollingsworth, T. D., Cameron, M. M., Bern, C. & Medley, G. F., 13/10/2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 41, p. 25742-25750 9 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Measuring air quality for advocacy in Africa (MA3): Feasibility and practicality of longitudinal ambient PM2.5 measurement using low-cost sensors

Awokola, B. I., Okello, G., Mortimer, K. J., Jewell, C. P., Erhart, A. & Semple, S., 3/10/2020, In: International Journal of Environmental Research and Public Health. 17, 19, 17 p., 7243.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Discussion of "Bayesian Regression Tree Models for Causal Inference: Regularization, Confounding, and Heterogeneous Effects"

Batista Do Prado, E., O'Neill, E., Hernandez, B., Parnell, A. C. & de Andrade Moral, R., 1/09/2020, In: Bayesian Analysis. 15, 3, p. 965-1056

Research output: Contribution to Journal/Magazine › Journal article › peer-review

A spatio-temporal approach to short-term prediction of visceral leishmaniasis diagnoses in India

Nightingale, E. S., Chapman, L. A. C., Srikantiah, S., Subramanian, S., Jambulingam, P., Bracher, J., Cameron, M. M. & Medley, G. F., 9/07/2020, In: PLoS Neglected Tropical Diseases.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Estimating the burden of antimicrobial resistance in Malawi: protocol for a prospective observational study of the morbidity, mortality and economic cost of third-generation cephalosporin resistant bloodstream infection

Lester, R., Maheswaran, H., Jewell, C. P., Lalloo, D. G. & Feasey, N. A., 1/06/2020, In: Wellcome Open Research. 5, 29.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Estimating the burden of antimicrobial resistance in Malawi: protocol for a prospective observational study of the morbidity, mortality and economic cost of third-generation cephalosporin resistant bloodstream infection [version 2; peer review: 2 approved]

Lester, R., Maheswaran, H., Jewell, C. P., Lalloo, D. G. & Feasey, N. A., 1/06/2020, In: Wellcome Open Research. 5, 29

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Motor unit number estimation via sequential Monte Carlo

Taylor, S., Sherlock, C., Ridall, G. & Fearnhead, P., 1/04/2020, In: Computational Statistics and Data Analysis. 144, 16 p., 106845.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Constrained Dynamic Programming and Supervised Penalty Learning Algorithms for Peak Detection in Genomic Data

Hocking, T. D., Rigaill, G., Fearnhead, P. & Bourque, G., 31/03/2020, In: Journal of Machine Learning Research. 21, p. 1-40 40 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Air pollution interventions and respiratory health: a systematic review

Saleh, S., Shepherd, W., Jewell, C., Lam, N. L., Balmes, J., Bates, M. N., Lai, P. S., Ochieng, C. A., Chinouya, M. & Mortimer, K., 1/02/2020, In: The International Journal of Tuberculosis and Lung Disease . 24, 2, p. 150-164 15 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Lung health and exposure to air pollution in Malawian children (CAPS): a cross-sectional study

Rylance, S., Nightingale, R., Naunje, A., Mbalume, F., Jewell, C., Balmes, J. R., Grigg, J. & Mortimer, K., 1/11/2019, In: Thorax. 74, 11, p. 1070-1077 8 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

sgmcmc: An R Package for Stochastic Gradient Markov Chain Monte Carlo

Baker, J., Fearnhead, P., Fox, E. B. & Nemeth, C. J., 31/10/2019, In: Journal of Statistical Software. 91, 3, p. 1-27 27 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Small animal disease surveillance 2019: Pruritus, pharmacosurveillance, skin tumours and flea infestations

Singleton, D. A., McGarry, J., Torres, J. R., Killick, D., Jewell, C., Smyth, S., Brant, B., Sánchez-Vizcaíno, F., Dawson, S., Pinchbeck, G. L., Noble, P. J. M. & Radford, A. D., 19/10/2019, In: Veterinary Record. 185, 15, p. 470-475 6 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Detecting changes in slope with an L₀ penalty

Fearnhead, P., Maidstone, R. & Letchford, A., 1/06/2019, In: Journal of Computational and Graphical Statistics. 28, 2, p. 265-275 11 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Small animal disease surveillance 2019: Respiratory disease, antibiotic prescription and canine infectious respiratory disease complex

Singleton, D. A., Stavisky, J., Jewell, C., Smyth, S., Brant, B., Sánchez-Vizcaíno, F., Dawson, S., Pinchbeck, G. L., Noble, P. J. M. & Radford, A. D., 23/05/2019, In: Veterinary Record. 184, 21, p. 640-645 6 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Control variates for stochastic gradient MCMC

Baker, J., Fearnhead, P., Fox, E. B. & Nemeth, C., 1/05/2019, In: Statistics and Computing. 29, 3, p. 599-615 17 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review