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Professor Muhammad Munir

Professor in Virology and Viral Zoonoses

  1. Chapter
  2. Published

    The Molecular Virology of Coronaviruses with Special Reference to SARS-CoV-2

    Clayton, E., Rohaim, M. A., Bayoumi, M. & Munir, M., 7/02/2022, Coronavirus Therapeutics – Volume I : Basic Science and Therapy Development. Asea, A. A. A. & Kaur, P. (eds.). Cham: Springer, p. 15-31 17 p. (Advances in Experimental Medicine and Biology; vol. 1352).

    Research output: Contribution in Book/Report/Proceedings - With ISBN/ISSNChapter

  3. Published

    Estimation of evolutionary dynamics and selection pressure in coronaviruses

    Munir, M. & Cortey, M., 26/02/2015, Coronaviruses: Methods and Protocols. Springer New York LLC, p. 41-48 8 p.

    Research output: Contribution in Book/Report/Proceedings - With ISBN/ISSNChapter

  4. Published

    Strategies and future of global eradication of Peste des Petits ruminants virus

    Dhinakar Raj, G., Thangavelu, A. & Munir, M., 1/01/2015, Peste Des Petits Ruminants Virus. Springer Berlin Heidelberg, p. 227-254 28 p.

    Research output: Contribution in Book/Report/Proceedings - With ISBN/ISSNChapter

  5. Published

    Host susceptibility to Peste des Petits ruminants virus

    Balamurugan, V., Rahman, H. & Munir, M., 1/01/2015, Peste Des Petits Ruminants Virus. Springer Berlin Heidelberg, p. 39-50 12 p.

    Research output: Contribution in Book/Report/Proceedings - With ISBN/ISSNChapter

  6. Published

    Pathology of peste des petits ruminants virus infection in small ruminants and concurrent infections

    Kul, O., Atmaca, H. T. & Munir, M., 1/01/2015, Peste Des Petits Ruminants Virus. Munir, M. (ed.). Springer Berlin Heidelberg, p. 119-131 13 p.

    Research output: Contribution in Book/Report/Proceedings - With ISBN/ISSNChapter

  7. Published

    Peste des petits ruminants: An introduction

    Munir, M., 1/01/2015, Peste Des Petits Ruminants Virus. Munir, M. (ed.). Springer Berlin Heidelberg, p. 1-9 9 p.

    Research output: Contribution in Book/Report/Proceedings - With ISBN/ISSNChapter

  8. Foreword/postscript
  9. Published

    Preface

    Munir, M., 1/01/2015, Peste Des Petits Ruminants Virus. Springer Berlin Heidelberg, p. v-vi 2 p.

    Research output: Contribution in Book/Report/Proceedings - With ISBN/ISSNForeword/postscript

  10. Journal article
  11. Published

    Avian Sarcoma/Leukosis Virus (RCAS)-mediated Over-expression of IFITM3 Protects Chicks from Highly Pathogenic Avian Influenza Virus Subtype H5N1

    Rohaim, M. A., Gardiner, E. L., Naggar, R. F. E., Abdelsabour, M. A., Madbouly, Y. M., Atasoy, M. O., Ahmed, K. A., El-Safty, M. M. & Munir, M., 28/02/2024, In: Microbes and Infection. 26, 1-2, 1 p., 105231.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  12. E-pub ahead of print

    Respiratory disease complex due to mixed viral infections in chicken in Jordan

    Al-Natour, M. Q., Rohaim, M. A., El Naggar, R. F., Abdelsabour, M. A., Afify, A. F., Madbouly, Y. M. & Munir, M., 30/04/2024, In: Poultry Science. 103, 4, 103565.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  13. Published

    Interferon-induced protein with tetratricopeptide repeats 5 of black fruit bat (Pteropus alecto) displays a broad inhibition of RNA viruses

    Clayton, E., Atasoy, M., El Naggar, R., Franco, A. C., Rohaim, M. & Munir, M., 19/02/2024, In: Frontiers in Immunology. 15, 1284056.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  14. Published

    Metagenomic Characterization of Poultry Cloacal and Oropharyngeal Swabs in Kenya Reveals Bacterial Pathogens and Their Antimicrobial Resistance Genes

    Panyako, P. M., Ommeh, S. C., Kuria, S. N., Lichoti, J. K., Musina, J., Nair, V., Nene, V., Munir, M., Oyola, S. O. & Callaway, T. R., 12/02/2024, In: International Journal of Microbiology. 2024, 8054338.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  15. Published

    Structural plasticity of omicron BA.5 and BA.2.75 for enhanced ACE-dependent entry into cells

    Lin, J., Anjum Huma, F., Irfan, A., Ali, S. S., Waheed, Y., Mohammad, A., Munir, M., Khan, A. & Wei, D-Q., 21/12/2023, In: Journal of biomolecular structure & dynamics. 41, 20, p. 10762-10773 12 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  16. Published

    Development of Polycistronic Baculovirus Surface Display Vectors to Simultaneously Express Viral Proteins of Porcine Reproductive and Respiratory Syndrome and Analysis of Their Immunogenicity in Swine

    Hsu, C-Y., Jang, Y., Huang, W-R., Wang, C-Y., Wen, H-W., Tsai, P-C., Yang, C-Y., Munir, M. & Liu, H-J., 31/10/2023, In: Vaccines. 11, 11, 1666.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  17. E-pub ahead of print

    Metagenomic characterization reveals virus coinfections associated with Newcastle disease virus among poultry in Kenya

    Panyako, P. M., Ommeh, S. C., Kuria, S. N., Lichoti, J. K., Musina, J., Nair, V., Nene, V., Oyola, S. O. & Munir, M., 11/10/2023, (E-pub ahead of print) In: Journal of basic microbiology.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  18. Published

    Comparative immunocompetence and interspecies transmission of avian orthoavulavirus-1 in feral birds originating from rural and urban settings

    Habib, M., Ul-Rahman, A., Zia-Ur-Rehman, Shahid, M. A., Sarwar, N., Bilal, M., Imran, M. S., Munir, M., Abbas, S. & Shabbir, M. Z., 30/09/2023, In: Comparative immunology, microbiology and infectious diseases. 100, 102036.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  19. Published

    VIDIIA Hunter diagnostic platform: a low-cost, smartphone connected, artificial intelligence-assisted COVID-19 rapid diagnostics approved for medical use in the UK

    Poirier, A. C., Riaño Moreno, R. D., Takaindisa, L., Carpenter, J., Mehat, J. W., Haddon, A., Rohaim, M. A., Williams, C., Burkhart, P., Conlon, C., Wilson, M., McClumpha, M., Stedman, A., Cordoni, G., Branavan, M., Tharmakulasingam, M., Chaudhry, N. S., Locker, N., Fernando, A., Balachandran, W., & 6 othersBullen, M., Collins, N., Rimer, D., Horton, D. L., Munir, M. & La Ragione, R. M., 28/09/2023, In: Frontiers in Molecular Biosciences. 10, 1144001.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  20. Published

    Structural communication fingerprinting and dynamic investigation of RBD-hACE2 complex from BA.1 × AY.4 recombinant variant (Deltacron) of SARS-CoV-2 to decipher the structural basis for enhanced transmission

    Wang, J., Fatima Muhammad, S., Aman, S., Khan, A., Munir, S., Khan, M., Mohammad, A., Waheed, Y., Munir, M., Guo, L., Chen, L. & Wei, D-Q., 31/08/2023, In: Journal of biomolecular structure & dynamics. 41, 16, p. 7665-7676 12 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  21. Published

    Genetic Diversity of Newcastle Disease Virus Involved in the 2021 Outbreaks in Backyard Poultry Farms in Tanzania

    Amoia, C. F., Hakizimana, J. N., Duggal, N. K., Chengulla, A. A., Rohaim, M., Munir, M., Weger-Lucarelli, J. & Misinzo, G., 21/07/2023, In: Veterinary Sciences. 10, 7, 477.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  22. Published

    Deep Structural Analysis of Myriads of Omicron Sub-Variants Revealed Hotspot for Vaccine Escape Immunity

    Gerardi, V., Rohaim, M. A., Naggar, R. F. E., Atasoy, M. O. & Munir, M., 15/03/2023, In: Vaccines. 11, 3, 668.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  23. Published

    Oncolytic Avian Reovirus σA-Modulated Upregulation of the HIF-1α/C-myc/glut1 Pathway to Produce More Energy in Different Cancer Cell Lines Benefiting Virus Replication

    Hsu, C-Y., Huang, J-W., Huang, W-R., Chen, I-C., Chen, M-S., Liao, T-L., Chang, Y-K., Munir, M. & Liu, H-J., 13/02/2023, In: Viruses. 15, 2, 16 p., 523.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  24. Published

    Evolutionary Trajectories of Avian Avulaviruses and Vaccines Compatibilities in Poultry.

    Rohaim, M. A., Al-Natour, M. Q., El Naggar, R. F., Abdelsabour, M. A., Madbouly, Y. M., Ahmed, K. A. & Munir, M., 3/11/2022, In: Vaccines. 10, 11, 21 p., 1862.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  25. Published

    Ultra-Large-Scale Screening of Natural Compounds and Free Energy Calculations Revealed Potential Inhibitors for the Receptor-Binding Domain (RBD) of SARS-CoV-2

    Guo, L., Zafar, F., Moeen, N., Alshabrmi, F. M., Lin, J., Ali, S. S., Munir, M., Khan, A., Wei, D. & Zhang, J. (ed.), 28/10/2022, In: Molecules. 27, 21, 16 p., 7317.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  26. Published

    Structural topological analysis of spike proteins of SARS-CoV-2 variants of concern highlight distinctive amino acid substitution patterns

    Peisahovics, F., Rohaim, M. A. & Munir, M., 30/09/2022, In: European Journal of Cell Biology. 101, 4, 13 p., 151275.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  27. Published

    Mapping molecular gene signatures mediated by SARS-COV-2 and large-scale and genome-wide transcriptomics comparative analysis among respiratory viruses of medical importance

    Smith, T., Rohaim, M. A. & Munir, M., 31/08/2022, In: Molecular and cellular probes. 64, 13 p., 101820.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  28. Published

    VP2 virus-like particles elicit protective immunity against duckling short beak and dwarfism syndrome in ducks

    Xiao, S., Wang, S., Jiang, D., Cheng, X., Zhu, X., Lin, F., Yu, B., Dong, H., Wang, X., Munir, M., Rohaim, M. A., Chen, S. & Chen, S., 31/03/2022, In: Transboundary and Emerging Diseases. 69, 2, p. 570-578 9 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  29. Published

    Temperature, humidity and outdoor air quality indicators influence COVID-19 spread rate and mortality in major cities of Saudi Arabia

    Ismail, I. M. I., Rashid, M. I., Ali, N., Altaf, B. A. S. & Munir, M., 31/03/2022, In: Environmental Research. 204, Part B, 10 p., 112071.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  30. Published

    Structural Bases of Zoonotic and Zooanthroponotic Transmission of SARS-CoV-2

    Clayton, E., Ackerley, J., Aelmans, M., Ali, N., Ashcroft, Z., Ashton, C., Barker, R., Budryte, V., Burrows, C., Cai, S., Callaghan, A., Carberry, J., Chatwin, R., Davies, I., Farlow, C., Gamblin, S., Iacobut, A., Lambe, A., Lynch, F., Mihalache, D., & 9 othersMokbel, A., Potamsetty, S., Qadir, Z., Soden, J., Sun, X., Vasile, A., Wheeler, O., Rohaim, M. A. & Munir, M., 17/02/2022, In: Viruses. 14, 2, 22 p., 418.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  31. Published

    Avian Orthoavulavirus Type-1 as Vaccine Vector against Respiratory Viral Pathogens in Animal and Human

    Vilela, J., Rohaim, M. A. & Munir, M., 8/02/2022, In: Vaccines. 10, 2, 19 p., 259.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  32. Published

    Potential Use of CRISPR/Cas13 Machinery in Understanding Virus–Host Interaction

    Bayoumi, M. & Munir, M., 26/11/2021, In: Frontiers in Microbiology. 12, 13 p., 743580.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  33. Published

    Structural and Evolutionary Insights Into the Binding of Host Receptors by the Rabies Virus Glycoprotein

    Khalifa, M. E., Unterholzner, L. & Munir, M., 11/10/2021, In: Frontiers in cellular and infection microbiology. 11, 13 p., 736114.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  34. Published

    Oncolytic effect of Newcastle disease virus is attributed to interferon regulation in canine mammary cancer cell lines

    Santos, M. R., Xavier, P. L. P., Pires, P. R. L., Rochetti, A. L., Rosim, D. F., Scagion, G. P., Zuccari, D. A. P. C., Munir, M., Ferreira, H. L. & Fukumasu, H., 30/09/2021, In: Veterinary and Comparative Oncology. 19, 3, p. 593-601 9 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  35. Published

    Immunogenicity and Protective Efficacy of an Intranasal Live-attenuated Vaccine Against SARS-CoV-2

    Park, J-G., Oladunni, F. S., Rohaim, M. A., Whittingham-Dowd, J., Tollitt, J., Hodges, M. D. J., Fathallah, N., Assas, M. B., Alhazmi, W., Almilaibary, A., Iqbal, M., Chang, P., Escalona, R., Shivanna, V., Torrelles, J. B., Worthington, J. J., Jackson-Jones, L. H., Martinez-Sobrido, L. & Munir, M., 30/09/2021, In: iScience. 24, 9, 102941.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  36. Published

    Insights into the genetic evolution of duck hepatitis a virus in Egypt

    Rohaim, M. A., El Naggar, R. F., Abdelsabour, M. A., Ahmed, B. A., Hamoud, M. M., Ahmed, K. A., Zahran, O. K. & Munir, M., 19/09/2021, In: Animals. 11, 9, 16 p., 2741.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  37. Published

    Immunogenicity and efficacy of a bivalent vaccine against infectious bronchitis virus

    Abdel-Sabour, M. A., Rohaim, M. A., Salman, O. J. A., Abodalal, S. E., Mohammad, F. F., Madkour, M. S., Abdel-Wanis, N. A. & Munir, M., 31/08/2021, In: Comparative Immunology, Microbiology and Infectious Diseases. 77, 6 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  38. Published

    An artificial intelligence-assisted portable low-cost device for the rapid detection of sars-cov-2

    Tharmakulasingam, M., Chaudhry, N. S., Fernando, A., Branavan, M., Balachandran, W., Poirier, A. C., Rohaim, M. A., Munir, M. & La Ragione, R. M., 26/08/2021, In: Electronics (Switzerland). 10, 17, 13 p., 2065.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  39. Published

    Transgenic chicks expressing interferon-inducible transmembrane protein 1 (Ifitm1) restrict highly pathogenic h5n1 influenza viruses

    Rohaim, M. A., Al-Natour, M. Q., Abdelsabour, M. A., El Naggar, R. F., Madbouly, Y. M., Ahmed, K. A. & Munir, M., 6/08/2021, In: International Journal of Molecular Sciences. 22, 16, 13 p., 8456.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  40. Published

    On-demand cold plasma activation of acetyl donors for bacteria and virus decontamination

    Szili, E. J., Ghimire, B., Patenall, B. L., Rohaim, M., Mistry, D., Fellows, A., Munir, M., Jenkins, A. T. A. & Short, R. D., 2/08/2021, In: Applied Physics Letters. 119, 5, 5 p., 054104.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  41. Published

    Evolutionary conservation of the DRACH signatures of potential N6-methyladenosine (m6A) sites among influenza A viruses

    Bayoumi, M. & Munir, M., 25/02/2021, In: Scientific Reports. 11, 1, 12 p., 4548.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  42. Published

    Comparative infectivity and transmissibility studies of wild-bird and chicken-origin highly pathogenic avian influenza viruses H5N8 in chickens

    Rohaim, M. A., El Naggar, R. F., Madbouly, Y., AbdelSabour, M. A., Ahmed, K. A. & Munir, M., 1/02/2021, In: Comparative Immunology, Microbiology and Infectious Diseases. 74, 9 p., 101594.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  43. Published

    Structural Insights Into m6A-Erasers: A Step Toward Understanding Molecule Specificity and Potential Antiviral Targeting

    Bayoumi, M. & Munir, M., 21/01/2021, In: Frontiers in cell and developmental biology. 8, 14 p., 587108.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  44. Published

    Structural and functional insights into non-structural proteins of coronaviruses

    Rohaim, M. A., El Naggar, R. F., Clayton, E. & Munir, M., 1/01/2021, In: Microbial pathogenesis. 150, 12 p., 104641.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  45. Published

    Potential reverse spillover of infectious bursal disease virus at the interface of commercial poultry and wild birds

    Naggar, R. F. E., Rohaim, M. A. & Munir, M., 31/12/2020, In: Virus Genes. 56, 6, p. 705–711 7 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  46. Published

    Fundamental Characteristics of Bat Interferon Systems

    Clayton, E. & Munir, M., 11/12/2020, In: Frontiers in cellular and infection microbiology. 10, 14 p., 527921.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  47. Published

    Artificial Intelligence-Assisted Loop Mediated Isothermal Amplification (ai-LAMP) for Rapid Detection of SARS-CoV-2

    Rohaim, M., Clayton, E., Sahin, I., Vilela, J., Khalifa, M., Al-Natour, M., Bayoumi, M., Poirier, A. C., Branavan, M., Tharmakulasingam, M., Choudhry, M. S., Sodi, R., Brown, A., Burkhart, P., Hacking, W., Botham, J., Boyce, J., Wilkinson, H., Williams, C., Whittingham-Dowd, J., & 8 othersShaw, E., Hodges, M., Butler, L., Bates, M., La Ragione, R., Balachandran, W., Fernando, A. & Munir, M., 1/09/2020, In: Viruses. 12, 9, 19 p., 972.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  48. Published

    A Scalable Topical Vectored Vaccine Candidate Against SARS-CoV-2

    Rohaim, M. A. & Munir, M., 24/08/2020, In: Vaccines. 8, 3, 16 p., 472.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  49. Published

    Structural and Virus Regulatory Insights Into Avian N6-Methyladenosine (m6A) Machinery

    Bayoumi, M., Rohaim, M. A. & Munir, M., 15/07/2020, In: Frontiers in cell and developmental biology. 8, 14 p., 543.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  50. Published

    Evolutionary analysis of infectious bronchitis virus reveals marked genetic diversity and recombination events

    Rohaim, M. A., El Naggar, R. F., Abdelsabour, M. A., Mohamed, M. H. A., El-Sabagh, I. M. & Munir, M., 29/05/2020, In: Genes. 11, 6, 14 p., 605.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  51. Published

    MERTK is a host factor that promotes classical swine fever virus entry and antagonizes innate immune response in PK-15 cells

    Zheng, G., Li, L-F., Zhang, Y., Qu, L., Wang, W., Li, M., Yu, S., Zhou, M., Luo, Y., Sun, Y., Munir, M., Li, S. & Qiu, H-J., 1/05/2020, In: Emerging Microbes and Infections. 9, 1, p. 571-581 11 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  52. Published

    Duckling short beak and dwarfism syndrome virus infection activates host innate immune response involving both DNA and RNA sensors

    Chen, S., Fang, T., Xiao, S., Lin, F., Cheng, X., Wang, S., Zhu, X., Chen, X., Zheng, M., Munir, M., Huang, M. & Yu, F., 31/01/2020, In: Microbial pathogenesis. 138, 10 p., 103816.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  53. Published

    A comprehensive global perspective on phylogenomics and evolutionary dynamics of Small ruminant morbillivirus

    Shabbir, M. Z., Rahman, A-U. & Munir, M., 8/01/2020, In: Scientific Reports. 10, 1, 17 p., 17.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

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