[2021-02-15 10:43:18,989] multiqc [DEBUG ] No MultiQC config found: /data/Bioinformatics_Softwere/Miniconda/.conda/envs/multiqc/lib/python3.6/site-packages/multiqc_config.yaml [2021-02-15 10:43:18,989] multiqc [DEBUG ] No MultiQC config found: /home/hatim/.multiqc_config.yaml [2021-02-15 10:43:18,991] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-02-15 10:43:18,991] multiqc [DEBUG ] Command used: /home/hatim/data/Bioinformatics_Softwere/Miniconda/.conda/envs/multiqc/bin/multiqc . [2021-02-15 10:43:19,249] multiqc [DEBUG ] Latest MultiQC version is v1.9 [2021-02-15 10:43:19,249] multiqc [INFO ] This is MultiQC v1.9 [2021-02-15 10:43:19,249] multiqc [DEBUG ] Command : /home/hatim/data/Bioinformatics_Softwere/Miniconda/.conda/envs/multiqc/bin/multiqc . [2021-02-15 10:43:19,250] multiqc [DEBUG ] Working dir : /data/Experments/E_37_SRA_Submission/Reads/CUR [2021-02-15 10:43:19,250] multiqc [INFO ] Template : default [2021-02-15 10:43:19,250] multiqc [DEBUG ] Running Python 3.6.12 | packaged by conda-forge | (default, Dec 9 2020, 00:36:02) [GCC 9.3.0] [2021-02-15 10:43:19,250] multiqc [INFO ] Searching : /data/Experments/E_37_SRA_Submission/Reads/CUR [2021-02-15 10:43:19,250] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-02-15 10:43:19,250] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpa_tnfjbo [2021-02-15 10:43:19,661] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CUR_BGI19_500_2_fastqc.html [2021-02-15 10:43:19,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CUR_BGI19_500_2_fastqc.html [2021-02-15 10:43:19,726] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: CUR_BGI19_500_2_fastqc.html [2021-02-15 10:43:19,727] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CUR_BGI19_500_2_fastqc.html [2021-02-15 10:43:19,727] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CUR_BGI19_500_2_fastqc.html [2021-02-15 10:43:19,727] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CUR_BGI19_500_2_fastqc.html [2021-02-15 10:43:19,727] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CUR_BGI19_500_2_fastqc.html [2021-02-15 10:43:19,732] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CUR_BGI19_500_2_fastqc.html [2021-02-15 10:43:19,979] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CUR_aber19_300_1.fq [2021-02-15 10:43:19,979] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CUR_BGI19_270_1.fq [2021-02-15 10:43:20,165] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CUR_aber19_300_1_fastqc.html [2021-02-15 10:43:20,218] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CUR_aber19_300_1_fastqc.html [2021-02-15 10:43:20,219] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: CUR_aber19_300_1_fastqc.html [2021-02-15 10:43:20,219] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CUR_aber19_300_1_fastqc.html [2021-02-15 10:43:20,219] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CUR_aber19_300_1_fastqc.html [2021-02-15 10:43:20,219] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CUR_aber19_300_1_fastqc.html [2021-02-15 10:43:20,219] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CUR_aber19_300_1_fastqc.html [2021-02-15 10:43:20,228] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CUR_aber19_300_1_fastqc.html [2021-02-15 10:43:20,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CUR_BGI19_500_1_fastqc.html [2021-02-15 10:43:20,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CUR_BGI19_500_1_fastqc.html [2021-02-15 10:43:20,776] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: CUR_BGI19_500_1_fastqc.html [2021-02-15 10:43:20,776] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CUR_BGI19_500_1_fastqc.html [2021-02-15 10:43:20,776] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CUR_BGI19_500_1_fastqc.html [2021-02-15 10:43:20,776] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CUR_BGI19_500_1_fastqc.html [2021-02-15 10:43:20,776] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CUR_BGI19_500_1_fastqc.html [2021-02-15 10:43:20,780] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CUR_BGI19_500_1_fastqc.html [2021-02-15 10:43:21,134] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CUR_BGI19_270_2_fastqc.html [2021-02-15 10:43:21,191] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CUR_BGI19_270_2_fastqc.html [2021-02-15 10:43:21,191] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: CUR_BGI19_270_2_fastqc.html [2021-02-15 10:43:21,191] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CUR_BGI19_270_2_fastqc.html [2021-02-15 10:43:21,192] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CUR_BGI19_270_2_fastqc.html [2021-02-15 10:43:21,192] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CUR_BGI19_270_2_fastqc.html [2021-02-15 10:43:21,192] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CUR_BGI19_270_2_fastqc.html [2021-02-15 10:43:21,196] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CUR_BGI19_270_2_fastqc.html [2021-02-15 10:43:21,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CUR_BGI19_500_2.fq [2021-02-15 10:43:21,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CUR_pycoQC.html [2021-02-15 10:43:21,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CUR_BGI19_270_2.fq [2021-02-15 10:43:21,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CUR_121219.fastq [2021-02-15 10:43:21,402] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CUR_BGI19_500_1.fq [2021-02-15 10:43:21,516] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CUR_aber19_300_2_fastqc.html [2021-02-15 10:43:21,588] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CUR_aber19_300_2_fastqc.html [2021-02-15 10:43:21,588] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: CUR_aber19_300_2_fastqc.html [2021-02-15 10:43:21,588] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CUR_aber19_300_2_fastqc.html [2021-02-15 10:43:21,588] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CUR_aber19_300_2_fastqc.html [2021-02-15 10:43:21,588] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CUR_aber19_300_2_fastqc.html [2021-02-15 10:43:21,588] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CUR_aber19_300_2_fastqc.html [2021-02-15 10:43:21,595] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CUR_aber19_300_2_fastqc.html [2021-02-15 10:43:21,992] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CUR_pycoQC.json [2021-02-15 10:43:22,131] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CUR_BGI19_270_1_fastqc.html [2021-02-15 10:43:22,194] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CUR_BGI19_270_1_fastqc.html [2021-02-15 10:43:22,194] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: CUR_BGI19_270_1_fastqc.html [2021-02-15 10:43:22,194] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CUR_BGI19_270_1_fastqc.html [2021-02-15 10:43:22,194] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CUR_BGI19_270_1_fastqc.html [2021-02-15 10:43:22,194] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CUR_BGI19_270_1_fastqc.html [2021-02-15 10:43:22,195] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CUR_BGI19_270_1_fastqc.html [2021-02-15 10:43:22,200] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CUR_BGI19_270_1_fastqc.html [2021-02-15 10:43:22,396] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CUR_aber19_300_2.fq [2021-02-15 10:43:23,580] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.4 [2021-02-15 10:43:23,585] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.4 [2021-02-15 10:43:23,597] multiqc [DEBUG ] No samples found: custom_content [2021-02-15 10:43:23,616] multiqc [DEBUG ] No samples found: conpair [2021-02-15 10:43:23,637] multiqc [DEBUG ] No samples found: peddy [2021-02-15 10:43:23,655] multiqc [DEBUG ] No samples found: somalier [2021-02-15 10:43:23,669] multiqc [DEBUG ] No samples found: methylQA [2021-02-15 10:43:23,705] multiqc [DEBUG ] No samples found: mosdepth [2021-02-15 10:43:23,718] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-02-15 10:43:23,725] multiqc [DEBUG ] No samples found: qualimap [2021-02-15 10:43:23,739] multiqc [DEBUG ] No samples found: preseq [2021-02-15 10:43:23,751] multiqc [DEBUG ] No samples found: quast [2021-02-15 10:43:23,775] multiqc [DEBUG ] No samples found: qorts [2021-02-15 10:43:23,794] multiqc [DEBUG ] No samples found: rna_seqc [2021-02-15 10:43:23,816] multiqc [DEBUG ] No samples found: rockhopper [2021-02-15 10:43:23,832] multiqc [DEBUG ] No samples found: rsem [2021-02-15 10:43:23,880] multiqc [DEBUG ] No samples found: rseqc [2021-02-15 10:43:23,903] multiqc [DEBUG ] No samples found: busco [2021-02-15 10:43:23,916] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-02-15 10:43:23,928] multiqc [DEBUG ] No samples found: disambiguate [2021-02-15 10:43:23,944] multiqc [DEBUG ] No samples found: supernova [2021-02-15 10:43:24,001] multiqc [DEBUG ] No samples found: deeptools [2021-02-15 10:43:24,015] multiqc [DEBUG ] No samples found: sargasso [2021-02-15 10:43:24,029] multiqc [DEBUG ] No samples found: verifybamid [2021-02-15 10:43:24,047] multiqc [DEBUG ] No samples found: mirtrace [2021-02-15 10:43:24,066] multiqc [DEBUG ] No samples found: happy [2021-02-15 10:43:24,080] multiqc [DEBUG ] No samples found: mirtop [2021-02-15 10:43:24,100] multiqc [DEBUG ] No samples found: homer [2021-02-15 10:43:24,115] multiqc [DEBUG ] No samples found: macs2 [2021-02-15 10:43:24,138] multiqc [DEBUG ] No samples found: theta2 [2021-02-15 10:43:24,158] multiqc [DEBUG ] No samples found: snpeff [2021-02-15 10:43:24,179] multiqc [DEBUG ] No samples found: gatk [2021-02-15 10:43:24,192] multiqc [DEBUG ] No samples found: htseq [2021-02-15 10:43:24,211] multiqc [DEBUG ] No samples found: bcftools [2021-02-15 10:43:24,225] multiqc [DEBUG ] No samples found: featureCounts [2021-02-15 10:43:24,246] multiqc [DEBUG ] No samples found: fgbio [2021-02-15 10:43:24,292] multiqc [DEBUG ] No samples found: dragen [2021-02-15 10:43:24,308] multiqc [DEBUG ] No samples found: dedup [2021-02-15 10:43:24,323] multiqc [DEBUG ] No samples found: damageprofiler [2021-02-15 10:43:24,420] multiqc [DEBUG ] No samples found: biobambam2 [2021-02-15 10:43:24,434] multiqc [DEBUG ] No samples found: mtnucratio [2021-02-15 10:43:24,438] multiqc [DEBUG ] No samples found: picard [2021-02-15 10:43:24,455] multiqc [DEBUG ] No samples found: prokka [2021-02-15 10:43:24,468] multiqc [DEBUG ] No samples found: samblaster [2021-02-15 10:43:24,498] multiqc [DEBUG ] No samples found: samtools [2021-02-15 10:43:24,516] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-02-15 10:43:24,533] multiqc [DEBUG ] No samples found: bamtools [2021-02-15 10:43:24,548] multiqc [DEBUG ] No samples found: jellyfish [2021-02-15 10:43:24,582] multiqc [DEBUG ] No samples found: vcftools [2021-02-15 10:43:24,611] multiqc [DEBUG ] No samples found: longranger [2021-02-15 10:43:24,629] multiqc [DEBUG ] No samples found: stacks [2021-02-15 10:43:24,650] multiqc [DEBUG ] No samples found: varscan2 [2021-02-15 10:43:24,751] multiqc [DEBUG ] No samples found: bbmap [2021-02-15 10:43:24,777] multiqc [DEBUG ] No samples found: bismark [2021-02-15 10:43:24,805] multiqc [DEBUG ] No samples found: biscuit [2021-02-15 10:43:24,837] multiqc [DEBUG ] No samples found: hicexplorer [2021-02-15 10:43:24,863] multiqc [DEBUG ] No samples found: hicup [2021-02-15 10:43:24,884] multiqc [DEBUG ] No samples found: hicpro [2021-02-15 10:43:24,914] multiqc [DEBUG ] No samples found: salmon [2021-02-15 10:43:24,937] multiqc [DEBUG ] No samples found: kallisto [2021-02-15 10:43:24,969] multiqc [DEBUG ] No samples found: slamdunk [2021-02-15 10:43:24,985] multiqc [DEBUG ] No samples found: star [2021-02-15 10:43:24,998] multiqc [DEBUG ] No samples found: hisat2 [2021-02-15 10:43:25,014] multiqc [DEBUG ] No samples found: tophat [2021-02-15 10:43:25,027] multiqc [DEBUG ] No samples found: bowtie2 [2021-02-15 10:43:25,041] multiqc [DEBUG ] No samples found: bowtie1 [2021-02-15 10:43:25,053] multiqc [DEBUG ] No samples found: snpsplit [2021-02-15 10:43:25,067] multiqc [DEBUG ] No samples found: kat [2021-02-15 10:43:25,084] multiqc [DEBUG ] No samples found: leehom [2021-02-15 10:43:25,099] multiqc [DEBUG ] No samples found: adapterRemoval [2021-02-15 10:43:25,112] multiqc [DEBUG ] No samples found: clipandmerge [2021-02-15 10:43:25,124] multiqc [DEBUG ] No samples found: cutadapt [2021-02-15 10:43:25,138] multiqc [DEBUG ] No samples found: flexbar [2021-02-15 10:43:25,176] multiqc [DEBUG ] No samples found: kaiju [2021-02-15 10:43:25,194] multiqc [DEBUG ] No samples found: kraken [2021-02-15 10:43:25,209] multiqc [DEBUG ] No samples found: malt [2021-02-15 10:43:25,233] multiqc [DEBUG ] No samples found: trimmomatic [2021-02-15 10:43:25,250] multiqc [DEBUG ] No samples found: sickle [2021-02-15 10:43:25,266] multiqc [DEBUG ] No samples found: skewer [2021-02-15 10:43:25,287] multiqc [DEBUG ] No samples found: sortmerna [2021-02-15 10:43:25,302] multiqc [DEBUG ] No samples found: biobloomtools [2021-02-15 10:43:25,314] multiqc [DEBUG ] No samples found: fastq_screen [2021-02-15 10:43:25,327] multiqc [DEBUG ] No samples found: afterqc [2021-02-15 10:43:25,340] multiqc [DEBUG ] No samples found: fastp [2021-02-15 10:43:25,645] multiqc.modules.fastqc.fastqc [INFO ] Found 6 reports [2021-02-15 10:43:26,549] multiqc.modules.pycoqc.pycoqc [INFO ] Found 1 reports [2021-02-15 10:43:26,567] multiqc [DEBUG ] No samples found: minionqc [2021-02-15 10:43:26,581] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-02-15 10:43:26,597] multiqc [DEBUG ] No samples found: clusterflow [2021-02-15 10:43:26,611] multiqc [DEBUG ] No samples found: bcl2fastq [2021-02-15 10:43:26,624] multiqc [DEBUG ] No samples found: interop [2021-02-15 10:43:26,637] multiqc [DEBUG ] No samples found: ivar [2021-02-15 10:43:26,651] multiqc [DEBUG ] No samples found: flash [2021-02-15 10:43:26,666] multiqc [DEBUG ] No samples found: seqyclean [2021-02-15 10:43:26,676] multiqc [INFO ] Compressing plot data [2021-02-15 10:43:26,864] multiqc [INFO ] Report : multiqc_report.html [2021-02-15 10:43:26,864] multiqc [INFO ] Data : multiqc_data [2021-02-15 10:43:26,864] multiqc [DEBUG ] Moving data file from '/tmp/tmpa_tnfjbo/multiqc_data' to '/data/Experments/E_37_SRA_Submission/Reads/CUR/multiqc_data' [2021-02-15 10:43:27,235] multiqc [INFO ] MultiQC complete