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Research

Results for bioinformatics

Publications & Outputs

  1. LGAAP: Leishmaniinae Genome Assembly and Annotation Pipeline

    Almutairi, H., Urbaniak, M. D., Bates, M. D., Jariyapan, N., Kwakye-Nuako, G., Thomaz-Soccol, V., Al-Salem, W. S., Dillon, R. J., Bates, P. A. & Gatherer, D., 22/07/2021, In: Microbiology Resource Announcements. 10, 29, 5 p., e0043921.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  2. Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals

    Folkersen, L., Gustafsson, S., Wang, Q., Hansen, D. H., Hedman, Å. K., Schork, A., Page, K., Zhernakova, D. V., Wu, Y., Peters, J., Eriksson, N., Bergen, S. E., Boutin, T. S., Bretherick, A. D., Enroth, S., Kalnapenkis, A., Gådin, J. R., Suur, B. E., Chen, Y., Matic, L., & 63 othersGale, J. D., Lee, J., Zhang, W., Quazi, A., Ala-Korpela, M., Choi, S. H., Claringbould, A., Danesh, J., Davey Smith, G., de Masi, F., Elmståhl, S., Engström, G., Fauman, E., Fernandez, C., Franke, L., Franks, P. W., Giedraitis, V., Haley, C., Hamsten, A., Ingason, A., Johansson, Å., Joshi, P. K., Lind, L., Lindgren, C. M., Lubitz, S., Palmer, T., Macdonald-Dunlop, E., Magnusson, M., Melander, O., Michaelsson, K., Morris, A. P., Mägi, R., Nagle, M. W., Nilsson, P. M., Nilsson, J., Orho-Melander, M., Polasek, O., Prins, B., Pålsson, E., Qi, T., Sjögren, M., Sundström, J., Surendran, P., Võsa, U., Werge, T., Wernersson, R., Westra, H-J., Yang, J., Zhernakova, A., Ärnlöv, J., Fu, J., Smith, J. G., Esko, T., Hayward, C., Gyllensten, U., Landen, M., Siegbahn, A., Wilson, J. F., Wallentin, L., Butterworth, A. S., Holmes, M. V., Ingelsson, E. & Mälarstig, A., 16/10/2020, In: Nature Metabolism. 2, 10, p. 1135-1148 14 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  3. Reflections on integrating bioinformatics into the undergraduate curriculum: The Lancaster experience

    Gatherer, D., 1/03/2020, In: Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology. 48, 2, p. 118-127 10 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  4. Visualization of protein sequence space with force-directed graphs, and their application to the choice of target-template pairs for homology modelling

    Mead, D. J. T., Lunagomez, S. & Gatherer, D., 1/11/2019, In: Journal of Molecular Graphics and Modelling. 92, p. 180-191 12 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  5. Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014-2015

    Atkinson, K. V., Bishop, L. A., Rhodes, G., Salez, N., McEwan, N. R., Hegarty, M. J., Robey, J., Harding, N., Wetherell, S., Lauder, R. M., Pickup, R. W., Wilkinson, M. & Gatherer, D., 24/10/2017, In: Scientific Data. 4, 7 p., 170161.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  6. Integrating microRNA and messenger RNA expression profiles in a rat model of deep vein thrombosis

    Jin, Q-Q., Sun, J-H., Du, Q-X., Lu, X-J., Zhu, X-Y., Fan, H-L., Holscher, C. & Wang, Y-Y., 10/2017, In: International Journal of Molecular Medicine. 40, 4, p. 1019-1028 10 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  7. Tempus et Locus: a tool for extracting precisely dated viral sequences from GenBank, and its application to the phylogenetics of primate erythroparvovirus 1 (B19V)

    Carter, A. R. & Gatherer, D., 4/07/2016, In: Biorxiv. 2016, 13 p.

    Research output: Contribution to Journal/Magazine › Journal article

  8. Order within a mosaic distribution of mitochondrial c-type cytochrome biogenesis systems?

    Allen, J. W. A., Jackson, A. P., Rigden, D. J., Willis, A. C., Ferguson, S. J. & Ginger, M. L., 05/2008, In: FEBS Journal. 275, 10, p. 2385-2402 18 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  9. New self-adaptive probabilistic neural networks in bioinformatic and medical tasks

    Georgiou, V. L., Pavlidis, N., Parsopoulos, K. E., Alevizos, P. D. & Vrahatis, M. N., 06/2006, In: International Journal on Artificial Intelligence Tools. 15, 3, p. 371-396 26 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review