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Dr Barbara Shih

Lecturer in Bioinformatics

  1. 2022
  2. Published

    Graphia: A platform for the graph-based visualisation and analysis of high dimensional data

    Freeman, T. C., Horsewell, S., Patir, A., Harling-Lee, J., Regan, T., Shih, B. B., Prendergast, J., Hume, D. A. & Angus, T., 25/07/2022, In: PLoS Computational Biology. 18, 7, e1010310.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  3. Published

    Stem cell-derived porcine macrophages as a new platform for studying host-pathogen interactions

    Meek, S., Watson, T., Eory, L., McFarlane, G., Wynne, F. J., McCleary, S., Dunn, L. E. M., Charlton, E. M., Craig, C., Shih, B., Regan, T., Taylor, R., Sutherland, L., Gossner, A., Chintoan-Uta, C., Fletcher, S., Beard, P. M., Hassan, M. A., Grey, F. & Hope, J. C. & 16 others, Stevens, M. P., Nowak-Imialek, M., Niemann, H., Ross, P. J., Tait-Burkard, C., Brown, S. M., Lefevre, L., Thomson, G., McColl, B. W., Lawrence, A. B., Archibald, A. L., Steinbach, F., Crooke, H. R., Gao, X., Liu, P. & Burdon, T., 14/01/2022, In: BMC Biology. 20, 1, 14.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  4. 2021
  5. Published

    Mapping the human genetic architecture of COVID-19

    COVID-19 Host Genetics Initiative & Shih, B., 16/12/2021, In: Nature. 600, p. 472-477 6 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  6. Published

    Aging-Related Impairments to M Cells in Peyer’s Patches Coincide With Disturbances to Paneth Cells

    Donaldson, D. S., Shih, B. B. & Mabbott, N. A., 6/12/2021, In: Frontiers in Immunology. 12, 761949.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  7. Published

    Genetic mechanisms of critical illness in COVID-19

    Pairo-Castineira, E., Clohisey, S., Klaric, L., Bretherick, A. D., Rawlik, K., Pasko, D., Walker, S., Parkinson, N., Fourman, M. H., Russell, C. D., Furniss, J., Richmond, A., Gountouna, E., Wrobel, N., Harrison, D., Wang, B., Wu, Y., Meynert, A., Griffiths, F. & Oosthuyzen, W. & 52 others, Kousathanas, A., Moutsianas, L., Yang, Z., Zhai, R., Zheng, C., Grimes, G., Beale, R., Millar, J., Shih, B., Keating, S., Zechner, M., Haley, C., Porteous, D. J., Hayward , C., Yang, J., Knight, J., Summers, C., Shankar-Hari, M., Klenerman, P., Turtle, L., Ho, A., Moore, S. C., Hinds, C., Horby, P., Nichol, A., Maslove, D., Ling, L., McAuley, D., Montgomery, H., Walsh, T., Pereira, A. C., Renieri, A., GenOMICC Investigators, ISARIC4C Investigators, COVID-19 Human Genetics Initiative, 23andMe Investigators, BRACOVID Investigators, Gen-COVID Investigators, Shen, X., Ponting, C. P., Fawkes, A., Tenesa, A., Caulfield, M., Scott, R., Rowan, K., Murphy, L., Openshaw, P. J. M., Semple, M. G., Law, A., Vitart, V., Wilson, J. F. & Baillie, J. K., 4/03/2021, In: Nature. 591, 7848, p. 92-98 7 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  8. Published

    Vitamin D3replacement enhances antigen-specific immunity in older adults

    Chambers, E. S., Vukmanovic-Stejic, M., Turner, C. T., Shih, B. B., Trahair, H., Pollara, G., Tsaliki, E., Rustin, M., Freeman, T. C., Mabbott, N. A., Noursadeghi, M., Martineau, A. R. & Akbar, A. N., 31/01/2021, In: Immunotherapy Advances. 1, 1, ltaa008.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  9. Published

    Recruitment of inflammatory monocytes by senescent fibroblasts inhibits antigen-specific tissue immunity during human aging

    Chambers, E. S., Vukmanovic-Stejic, M., Shih, B. B., Trahair, H., Subramanian, P., Devine, O. P., Glanville, J., Gilroy, D., Rustin, M. H. A., Freeman, T. C., Mabbott, N. A. & Akbar, A. N., 14/01/2021, In: Nature Aging. 1, 1, p. 101-113 13 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  10. 2020
  11. Published

    Computational Analysis of SARS-CoV-2 and SARS-Like Coronavirus Diversity in Human, Bat and Pangolin Populations

    Dimonaco, N. J., Salavati, M. & Shih, B., 30/12/2020, In: Viruses. 13, 1, 49.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  12. Published

    Madin-Darby bovine kidney (MDBK) cells are a suitable cell line for the propagation and study of the bovine poxvirus lumpy skin disease virus

    Fay, P. C., Cook, C. G., Wijesiriwardana, N., Tore, G., Comtet, L., Carpentier, A., Shih, B., Freimanis, G., Haga, I. R. & Beard, P. M., 30/11/2020, In: Journal of Virological Methods. 285, 113943.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  13. Published

    Influence of skin melanisation and ultraviolet radiation on biomarkers of systemic oxidative stress

    Shih, B. B., Farrar, M. D., Vail, A., Allan, D., Chao, M.-R., Hu, C.-W., Jones, G. D. D., Cooke, M. S. & Rhodes, L. E., 20/11/2020, In: Free Radical Biology and Medicine. 160, p. 40-46 7 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

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