Sequencing and Analysis of Lumpy Skin Disease Virus Whole Genomes Reveals a New Viral Subgroup in West and Central Africa

Haga, I. R., Shih, B. B., Tore, G., Polo, N., Ribeca, P., Gombo-Ochir, D., Shura, G., Tserenchimed, T., Enkhbold, B., Purevtseren, D., Ulziibat, G., Damdinjav, B., Yimer, L., Bari, F. D., Gizaw, D., Adedeji, A. J., Atai, R. B., Adole, J. A., Dogonyaro, B. B., Kumarawadu, P. L., & 8 othersBatten, C., Corla, A., Freimanis, G. L., Tennakoon, C., Law, A., Lycett, S., Downing, T. & Beard, P. M., 3/04/2024, In: Viruses. 16, 4, 557.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Delay in loop ileostomy reversal surgery does not impact upon post-operative clinical outcomes. Complications are associated with an increased loss of microflora in the defunctioned intestine

Beamish, E. L., Johnson, J., Shih, B., Killick, R., Dondelinger, F., McGoran, C., Brewster-Craig, C., Davies, A., Bhowmick, A. & Rigby, R. J., 31/12/2023, In: Gut Microbes. 15, 1, 2199659.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Development and function of chicken XCR1 + conventional dendritic cells

Wu, Z., Shih, B., Macdonald, J., Meunier, D., Hogan, K., Chintoan-Uta, C., Gilhooley, H., Hu, T., Beltran, M., Henderson, N. C., Sang, H. M., Stevens, M. P., McGrew, M. J. & Balic, A., 25/10/2023, In: Frontiers in Immunology. 14, 1273661.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Unraveling the epidemiology of Mycobacterium bovis using whole-genome sequencing combined with environmental and demographic data

Rossi, G., Shih, B. B. J., Egbe, N. F., Motta, P., Duchatel, F., Kelly, R. F., Ndip, L., Sander, M., Tanya, V. N., Lycett, S. J., Bronsvoort, B. M. & Muwonge, A., 17/05/2023, In: Frontiers in Veterinary Science. 10, 1086001.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Defining the pig microglial transcriptome reveals its core signature, regional heterogeneity, and similarity with human and rodent microglia

Shih, B. B., Brown, S. M., Barrington, J., Lefevre, L., Mabbott, N. A., Priller, J., Thompson, G., Lawrence, A. B. & McColl, B. W., 28/02/2023, In: Glia. 71, 2, p. 334-349 16 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

The developmental basis of fingerprint pattern formation and variation.

Glover, J. D., Sudderick, ZR., Shih, BB., Batho-Samblas, C., Charlton, L., Krause, AL., Anderson, C., Riddell, J., Balic, A., Li, J., Klika, V., Woolley, TE., Gaffney, EA., Corsinotti, A., Anderson, RA., Johnston, LJ., Brown, SJ., Wang, S., Chen, Y., Crichton, M., & 1 othersHeadon, DJ., 9/02/2023, In: Cell. p. 940-956

Research output: Contribution to Journal/Magazine › Journal article › peer-review

A novel strain of lumpy skin disease virus causes clinical disease in cattle in Hong Kong

Flannery, J., Shih, B., Haga, I. R., Ashby, M., Corla, A., King, S., Freimanis, G., Polo, N., Tse, AC-N., Brackman, C. J., Chan, J., Pun, P., Ferguson, A. D., Law, A., Lycett, S., Batten, C. & Beard, P. M., 31/07/2022, In: Transboundary and Emerging Diseases. 69, 4, p. e336-e343 8 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Graphia: A platform for the graph-based visualisation and analysis of high dimensional data

Freeman, T. C., Horsewell, S., Patir, A., Harling-Lee, J., Regan, T., Shih, B. B., Prendergast, J., Hume, D. A. & Angus, T., 25/07/2022, In: PLoS Computational Biology. 18, 7, e1010310.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Stem cell-derived porcine macrophages as a new platform for studying host-pathogen interactions

Meek, S., Watson, T., Eory, L., McFarlane, G., Wynne, F. J., McCleary, S., Dunn, L. E. M., Charlton, E. M., Craig, C., Shih, B., Regan, T., Taylor, R., Sutherland, L., Gossner, A., Chintoan-Uta, C., Fletcher, S., Beard, P. M., Hassan, M. A., Grey, F., Hope, J. C., & 16 othersStevens, M. P., Nowak-Imialek, M., Niemann, H., Ross, P. J., Tait-Burkard, C., Brown, S. M., Lefevre, L., Thomson, G., McColl, B. W., Lawrence, A. B., Archibald, A. L., Steinbach, F., Crooke, H. R., Gao, X., Liu, P. & Burdon, T., 14/01/2022, In: BMC Biology. 20, 1, 14.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Mapping the human genetic architecture of COVID-19

COVID-19 Host Genetics Initiative & Shih, B., 16/12/2021, In: Nature. 600, p. 472-477 6 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Aging-Related Impairments to M Cells in Peyer’s Patches Coincide With Disturbances to Paneth Cells

Donaldson, D. S., Shih, B. B. & Mabbott, N. A., 6/12/2021, In: Frontiers in Immunology. 12, 761949.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Genetic mechanisms of critical illness in COVID-19

Pairo-Castineira, E., Clohisey, S., Klaric, L., Bretherick, A. D., Rawlik, K., Pasko, D., Walker, S., Parkinson, N., Fourman, M. H., Russell, C. D., Furniss, J., Richmond, A., Gountouna, E., Wrobel, N., Harrison, D., Wang, B., Wu, Y., Meynert, A., Griffiths, F., Oosthuyzen, W., & 52 othersKousathanas, A., Moutsianas, L., Yang, Z., Zhai, R., Zheng, C., Grimes, G., Beale, R., Millar, J., Shih, B., Keating, S., Zechner, M., Haley, C., Porteous, D. J., Hayward, C., Yang, J., Knight, J., Summers, C., Shankar-Hari, M., Klenerman, P., Turtle, L., Ho, A., Moore, S. C., Hinds, C., Horby, P., Nichol, A., Maslove, D., Ling, L., McAuley, D., Montgomery, H., Walsh, T., Pereira, A. C., Renieri, A., GenOMICC Investigators, ISARIC4C Investigators, COVID-19 Human Genetics Initiative, 23andMe Investigators, BRACOVID Investigators, Gen-COVID Investigators, Shen, X., Ponting, C. P., Fawkes, A., Tenesa, A., Caulfield, M., Scott, R., Rowan, K., Murphy, L., Openshaw, P. J. M., Semple, M. G., Law, A., Vitart, V., Wilson, J. F. & Baillie, J. K., 4/03/2021, In: Nature. 591, 7848, p. 92-98 7 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Recruitment of inflammatory monocytes by senescent fibroblasts inhibits antigen-specific tissue immunity during human aging

Chambers, E. S., Vukmanovic-Stejic, M., Shih, B. B., Trahair, H., Subramanian, P., Devine, O. P., Glanville, J., Gilroy, D., Rustin, M. H. A., Freeman, T. C., Mabbott, N. A. & Akbar, A. N., 14/01/2021, In: Nature Aging. 1, 1, p. 101-113 13 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Vitamin D₃replacement enhances antigen-specific immunity in older adults

Chambers, E. S., Vukmanovic-Stejic, M., Turner, C. T., Shih, B. B., Trahair, H., Pollara, G., Tsaliki, E., Rustin, M., Freeman, T. C., Mabbott, N. A., Noursadeghi, M., Martineau, A. R. & Akbar, A. N., 1/01/2021, In: Immunotherapy Advances. 1, 1, ltaa008.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Computational Analysis of SARS-CoV-2 and SARS-Like Coronavirus Diversity in Human, Bat and Pangolin Populations

Dimonaco, N. J., Salavati, M. & Shih, B., 30/12/2020, In: Viruses. 13, 1, 49.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Madin-Darby bovine kidney (MDBK) cells are a suitable cell line for the propagation and study of the bovine poxvirus lumpy skin disease virus

Fay, P. C., Cook, C. G., Wijesiriwardana, N., Tore, G., Comtet, L., Carpentier, A., Shih, B., Freimanis, G., Haga, I. R. & Beard, P. M., 30/11/2020, In: Journal of Virological Methods. 285, 113943.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Influence of skin melanisation and ultraviolet radiation on biomarkers of systemic oxidative stress

Shih, B. B., Farrar, M. D., Vail, A., Allan, D., Chao, M-R., Hu, C-W., Jones, G. D. D., Cooke, M. S. & Rhodes, L. E., 20/11/2020, In: Free Radical Biology and Medicine. 160, p. 40-46 7 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Photoprotection conferred by low level summer sunlight exposures against pro-inflammatory UVR insult

Felton, S. J., Shih, B. B., Watson, R. E. B., Kift, R., Webb, A. R. & Rhodes, L. E., 1/06/2020, In: Photochemical and Photobiological Sciences. 19, 6, p. 810-818 9 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Identification of Complex Rumen Microbiome Interaction Within Diverse Functional Niches as Mechanisms Affecting the Variation of Methane Emissions in Bovine

Martínez-Álvaro, M., Auffret, M. D., Stewart, R. D., Dewhurst, R. J., Duthie, C-A., Rooke, J. A., Wallace, R. J., Shih, B., Freeman, T. C., Watson, M. & Roehe, R., 17/04/2020, In: Frontiers in Microbiology. 11, 659.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Visualization and analysis of RNA-Seq assembly graphs

Nazarie, F. W., Shih, B., Angus, T., Barnett, M. W., Chen, S-H., Summers, K. M., Klein, K., Faulkner, G. J., Saini, H. K., Watson, M., Dongen, S. V., Enright, A. J. & Freeman, T. C., 22/08/2019, In: Nucleic Acids Research. 47, 14, p. 7262-7275 14 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

A core transcriptional signature of human microglia: Derivation and utility in describing region-dependent alterations associated with Alzheimer's disease

Patir, A., Shih, B., McColl, B. W. & Freeman, T. C., 13/02/2019, In: Glia. 67, 7, p. 1240-1253 14 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Immune cell gene signatures for profiling the microenvironment of solid tumors

Nirmal, A. J., Regan, T., Shih, B. B., Hume, D. A., Sims, A. H. & Freeman, T. C., 2/11/2018, In: Cancer Immunology Research. 6, 11, p. 1388-1400 13 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Fractional Sunburn Threshold UVR Doses Generate Equivalent Vitamin D and DNA Damage in Skin Types I–VI but with Epidermal DNA Damage Gradient Correlated to Skin Darkness

Shih, B. B., Farrar, M. D., Cooke, M. S., Osman, J., Langton, A. K., Kift, R., Webb, A. R., Berry, J. L., Watson, R. E. B., Vail, A., de Gruijl, F. R. & Rhodes, L. E., 31/10/2018, In: Journal of Investigative Dermatology. 138, 10, p. 2244-2252 9 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Derivation of marker gene signatures from human skin and their use in the interpretation of the transcriptional changes associated with dermatological disorders

Shih, B. B., Nirmal, A. J., Headon, D. J., Akbar, A. N., Mabbott, N. A. & Freeman, T. C., 30/04/2017, In: Journal of Pathology. 241, 5, p. 600-613 14 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Transforming growth factor beta gene signatures are spatially enriched in keloid tissue biopsies and ex vivo-cultured keloid fibroblasts

Taylor, A., Budd, D. C., Shih, B., Seifert, O., Beaton, A., Wright, T., Dempsey, M., Kelly, F., Egerton, J., Marshall, R. P., Aston, N. & Bayat, A., 4/01/2017, In: Acta dermato-venereologica. 97, 1, p. 10-16 7 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Whole genome microarray data of chronic wound debridement prior to application of dermal skin substitutes

Ashrafi, M., Sebastian, A., Shih, B., Greaves, N., Alonso-Rasgado, T., Baguneid, M. & Bayat, A., 30/09/2016, In: Wound Repair and Regeneration. 24, 5, p. 870-875 6 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Robust Detection of Minimal Sunburn in Pigmented Skin by 785 nm Laser Speckle Contrast Imaging of Blood Flux

Shih, B. B., Allan, D., De Gruijl, F. R. & Rhodes, L. E., 30/04/2015, In: Journal of Investigative Dermatology. 135, p. 1197-1199 3 p.

Research output: Contribution to Journal/Magazine › Letter › peer-review

Identification of molecular phenotypic descriptors of breast capsular contracture formation using informatics analysis of the whole genome transcriptome

Kyle, D. J. T., Harvey, A. G., Shih, B., Tan, K. T., Chaudhry, I. H. & Bayat, A., 30/09/2013, In: Wound Repair and Regeneration. 21, 5, p. 762-769 8 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Identification of biomarkers in sequential biopsies of patients with chronic wounds receiving simultaneous acute wounds: A genetic, histological, and noninvasive imaging study

Shih, B., Sultan, M. J., Chaudhry, I. H., Tan, K. T., Johal, K. S., Marstan, A., Tsai, M., Baguneid, M. & Bayat, A., 30/09/2012, In: Wound Repair and Regeneration. 20, 5, p. 757-769 13 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Whole genome and global expression profiling of Dupuytren's disease: Systematic review of current findings and future perspectives

Shih, B., Watson, S. & Bayat, A., 8/08/2012, In: Annals of the Rheumatic Diseases . 71, 9, p. 1440-1447 8 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Comparative genomic hybridisation analysis of keloid tissue in Caucasians suggests possible involvement of HLA-DRB5 in disease pathogenesis

Shih, B. & Bayat, A., 30/04/2012, In: Archives of Dermatological Research. 304, p. 241-249 9 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

DNA copy number variations at chromosome 7p14.1 and chromosome 14q11.2 are associated with Dupuytren's disease: Potential role for MMP and Wnt signaling pathway

Shih, B., Tassabehji, M., Watson, J. S. & Bayat, A., 30/04/2012, In: Plastic and Reconstructive Surgery. 129, 4, p. 921-932 12 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Scientific understanding and clinical management of Dupuytren disease

Shih, B. & Bayat, A., 31/12/2010, In: Nature Reviews Rheumatology. 6, p. 715-726 12 p.

Research output: Contribution to Journal/Magazine › Journal article

Genetics of keloid scarring

Shih, B. & Bayat, A., 8/12/2010, In: Archives of Dermatological Research. 302, p. 319-339 21 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Tumour necrosis factor-α Expression is associated with increased severity of periprosthetic breast capsular contracture

Tan, K. T., Wijeratne, D., Shih, B., Baildam, A. D. & Bayat, A., 30/10/2010, In: European Surgical Research.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Genome-Wide High-Resolution Screening in Dupuytren's Disease Reveals Common Regions of DNA Copy Number Alterations

Shih, B. B., Tassabehji, M., Watson, J. S., McGrouther, A. D. & Bayat, A., 31/07/2010, In: Journal of Hand Surgery. 35, 7, p. 1172-1183 12 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Molecular dissection of abnormal wound healing processes resulting in keloid disease

Shih, B., Garside, E., McGrouther, D. A. & Bayat, A., 19/03/2010, In: Wound Repair and Regeneration. 18, 2, p. 139-153 15 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Differential gene expression analysis of subcutaneous fat, fascia, and skin overlying a dupuytren's disease nodule in comparison to control tissue

Shih, B., Brown, J. J., Armstrong, D. J., Lindau, T. & Bayat, A., 1/09/2009, In: Hand. 4, 3, p. 294-301 8 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Identification of Biomarkers in Dupuytren's Disease by Comparative Analysis of Fibroblasts Versus Tissue Biopsies in Disease-Specific Phenotypes

Shih, B., Wijeratne, D., Armstrong, D. J., Lindau, T., Day, P. J. R. & Bayat, A., 31/01/2009, In: Journal of Hand Surgery. 34, 1, p. 124-136 13 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review