Jonathan Read - Publications & Outputs - Research Portal

Dr Jonathan Read

Senior Lecturer in Biostatistics

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Published
Patterns of human social contact and contact with animals in Shanghai, China
Zhang, J., Klepac, P., Read, J., Rosello, A., Wang, X., Lai, S., Li, M., Song, Y., Wei, Q., Jiang, H., Yang, J., Lynn, H., Flasche, S., Jit, M. & Yu, H., 22/10/2019, In: Scientific Reports. 9, 11 p., 15141.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Life course exposures continually shape antibody profiles and risk of seroconversion to influenza
Yang, B., Lessler, J., Zhu, H., Jiang, C. Q., Read, J. M., Hay, J. A., Kwok, K. O., Shen, R., Guan, Y., Riley, S. & Cummings, D. A. T., 23/07/2020, In: PLoS Pathogens. 16, 7, e1008635.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Long term intrinsic cycling in human life course antibody responses to influenza A(H3N2): an observational and modeling study
Yang, B., García-Carreras, B., Lessler, J., Read, J. M., Zhu, H., Metcalf, C. J. E., Hay, J. A., Kwok, K. O., Shen, R., Jiang, C. Q., Guan, Y., Riley, S. & Cummings, D. A., 16/12/2022, In: eLife. 11, e81457.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Prevalence and risk factors of community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA) carriage in Asia-Pacific region from 2000 to 2016: A systematic review and meta-analysis
Wong, J., Ip, M., Tang, A., Wei, V., Wong, S., Riley, S., Read, J. M. & Kwok, K. O., 08/2018, In: International Journal of Infectious Diseases. 73, Suppl., p. 135-136 2 p.
Research output: Contribution to Journal/Magazine › Meeting abstract › peer-review
Published
Prevalence and risk factors of community-associated methicillin-resistant carriage in Asia-Pacific region from 2000 to 2016: a systematic review and meta-analysis
Wong, J. W., Ip, M., Tang, A., Wei, V. W., Wong, S. Y., Riley, S., Read, J. M. & Kwok, K. O., 12/10/2018, In: Clinical Epidemiology. 10, p. 1489-1501 13 p.
Research output: Contribution to Journal/Magazine › Review article › peer-review
Published
Prevalence of endemic respiratory viruses during the COVID-19 pandemic in urban and rural Malawi
Vink, E., Banda, L., Amoah, A. S., Kasenda, S., Read, J. M., Jewell, C., Denis, B., Mwale, A. C., Crampin, A., Anscombe, C., Menyere, M. & Ho, A., 29/02/2024, In: Open Forum Infectious Diseases. 11, 2, p. ofad643
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
A comparison of hemagglutination inhibition and neutralization assays for characterizing immunity to seasonal influenza A
Truelove, S., Zhu, H., Lessler, J., Riley, S., Read, J. M., Wang, S., Kwok, K. O., Guan, Y., Jiang, C. Q. & Cummings, D. A. T., 11/2016, In: Influenza and Other Respiratory Viruses. 10, 6, p. 518-524 7 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
The spatiotemporal association of non-prescription retail sales with cases during the 2009 influenza pandemic in Great Britain
Todd, S., Diggle, P. J., White, P. J., Fearne, A. & Read, J., 2014, In: BMJ Open. 4, 4, p. 1-9 9 p., e004869.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Primary Care Influenza-like Illness Surveillance in Ho Chi Minh City, Vietnam 2013-2015
Todd, S., Huong, N. T. C., Thanh, N. T. L., Vy, N. H. T., Hung, N. T., Thao, T. T. N., Phuong, H. T., van Doorn, H. R., Hang, V. T. T., Chau, N. V. V., Read, J. M., Lalloo, D. G. & Boni, M. F., 09/2018, In: Influenza and Other Respiratory Viruses. 12, 5, p. 623-631 9 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Authors' reply to the discussion of ‘Efficient Bayesian Inference of Instantaneous Reproduction Numbers at Fine Spatial Scales, with an Application to Mapping and Nowcasting the Covid‐19 Epidemic in British Local Authorities’ by Teh et al. in Session 2 of the Royal Statistical Society's Special Topic Meeting on <scp>COVID</scp> ‐19 transmission: 11 June 2021
Teh, Y. W., Elesedy, B., He, B., Hutchinson, M., Zaidi, S., Bhoopchand, A., Paquet, U., Tomasev, N., Read, J. & Diggle, P. J., 30/11/2022, In: Journal of the Royal Statistical Society: Series A Statistics in Society. 185, S1, p. S107-S109 3 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
E-pub ahead of print
Efficient Bayesian inference of instantaneous reproduction numbers at fine spatial scales, with an application to mapping and nowcasting the Covid‐19 epidemic in British local authorities
Teh, Y. W., Elesedy, B., He, B., Hutchinson, M., Zaidi, S., Bhoopchand, A., Paquet, U., Tomasev, N., Read, J. & Diggle, P. J., 8/12/2022, (E-pub ahead of print) In: Journal of the Royal Statistical Society: Series A Statistics in Society.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Reconstructing unseen transmission events to infer dengue dynamics from viral sequences
Salje, H., Wesolowski, A., Brown, T. S., Kiang, M. V., Berry, I. M., Lefrancq, N., Fernandez, S., Jarman, R. G., Ruchusatsawat, K., Iamsirithaworn, S., Vandepitte, W. P., Suntarattiwong, P., Read, J. M., Klungthong, C., Thaisomboonsuk, B., Engø-Monsen, K., Buckee, C., Cauchemez, S. & Cummings, D. A. T., 22/03/2021, In: Nature Communications. 12, 1, 10 p., 1810.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Effectiveness of screening for Ebola at airports
Read, J., Diggle, P. J., Chirombo, J., Solomon, T. & Baylis, M., 3/01/2015, In: Lancet. 385, 9962, p. 23-24 2 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Social mixing patterns in rural and urban areas of southern China
Read, J. M., Lessler, J., Riley, S., Wang, S., Tan, L. J., Kwok, K. O., Guan, Y., Jiang, C. Q. & Cummings, D. A. T., 22/06/2014, In: Proceedings of the Royal Society B: Biological Sciences. 281, 1785, 8 p., 20140268.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Close encounters of the infectious kind: methods to measure social mixing behaviour
Read, J. M., Edmunds, W. J., Riley, S., Lessler, J. & Cummings, D. A. T., 12/2012, In: Epidemiology and Infection. 140, 12, p. 2117-2130 14 p.
Research output: Contribution to Journal/Magazine › Literature review › peer-review
Published
Dynamic social networks and the implications for the spread of infectious disease
Read, J. M., Eames, K. T. D. & Edmunds, W. J., 6/09/2008, In: Interface. 5, 26, p. 1001-1007 7 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Stochasticity generates an evolutionary instability for infectious disease
Read, J. M. & Keeling, M. J., 09/2007, In: Ecology Letters. 10, 9, p. 818-827 10 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Disease evolution across a range of spatio-temporal scales
Read, J. M. & Keeling, M. J., 09/2006, In: Theoretical Population Biology. 70, 2, p. 201-213 13 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Disease evolution on networks: the role of contact structure
Read, J. M. & Keeling, M. J., 7/04/2003, In: Proceedings of the Royal Society B: Biological Sciences. 270, 1516, p. 699-708 10 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
HeathMod: a model of the impact of seasonal grazing by sheep on upland heaths dominated by Calluna vulgaris (heather)
Read, J. M., Birch, C. P. D. & Milne, J. A., 06/2002, In: Biological Conservation. 105, 3, p. 279-292 14 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Influenza and other respiratory viral infections associated with absence from school among schoolchildren in Pittsburgh, Pennsylvania, USA: a cohort study
Read, J. M., Zimmer, S., Vukotich C., J., Schweizer, M. L., Galloway, D., Lingle, C., Yearwood, G., Calderone, P., Noble, E., Quadelacy, T., Grantz, K., Rinaldo, C., Gao, H., Rainey, J., Uzicanin, A. & Cummings, D. A. T., 22/03/2021, In: BMC Infectious Diseases. 21, 1, 10 p., 291.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Novel coronavirus 2019-nCoV (COVID-19): Early estimation of epidemiological parameters and epidemic size estimates
Read, J. M., Bridgen, J. R. E., Cummings, D. A. T., Ho, A. & Jewell, C. P., 19/07/2021, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 376, 1829, 9 p., 20200265.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Hospital-acquired SARS-CoV-2 infection in the UK's first COVID-19 pandemic wave
Read, J., Green, C., Harrison, E., Docherty, A., Funk, S., Harrison, J., Girvan, M., Hardwick, H., Dunning, J., Nguyen-Van-Tam, J., Openshaw, P., Baillie, K. & Semple, M., 18/09/2021, In: The Lancet. 398, 10305, p. 1037-1038 2 p.
Research output: Contribution to Journal/Magazine › Letter › peer-review
Published
Using serological measures to estimate influenza incidence in the presence of secular trends in exposure and immuno-modulation of antibody response
Quandelacy, T. M., Cummings, D. A. T., Jiang, C. Q., Yang, B., Kwok, K. O., Dai, B., Shen, R., Read, J. M., Zhu, H., Guan, Y., Riley, S. & Lessler, J., 31/03/2021, In: Influenza and Other Respiratory Viruses. 15, 2, p. 235-244 10 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Predicting virologically confirmed influenza using school absences in Allegheny County, Pennsylvania, USA during the 2007-2015 influenza seasons
Quandelacy, T. M., Zimmer, S., Lessler, J., Vukotich, C., Bieltz, R., Grantz, K. H., Galloway, D., Read, J. M., Zheteyeva, Y., Gao, H., Uzicanin, A. & Cummings, D. A. T., 30/11/2021, In: Influenza and Other Respiratory Viruses. 15, 6, p. 757-766 10 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Household transmission dynamics of seasonal human coronaviruses
Quandelacy, T. M., Hitchings, M. D. T., Lessler, J., Read, J. M., Vukotich, C., Azman, A. S., Salje, H., Zimmer, S., Gao, H., Zheteyeva, Y., Uzicanin, A. & Cummings, D. A. T., 1/05/2023, In: The Journal of infectious diseases. 227, 9, p. 1104-1112 9 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Modelling the impact of respiratory syncytial virus (RSV) vaccine and immunoprophylaxis strategies in New Zealand
Prasad, N., Read, J. M., Jewell, C., Waite, B., Trenholme, A. A., Huang, Q. S., Grant, C. C., Newbern, E. C. & Hogan, A. B., 13/07/2021, In: Vaccine. 39, 31, p. 4383-4390 8 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Risk factors for UK Plasmodium falciparum cases
Pinsent, A., Read, J. M., Griffin, J. T., Smith, V., Gething, P. W., Ghani, A. C., Pasvol, G. & Hollingsworth, T. D., 4/08/2014, In: Malaria Journal. 13, 8 p., 298.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Intestinal Perforations Associated With a High Mortality and Frequent Complications During an Epidemic of Multidrug-resistant Typhoid Fever in Blantyre, Malawi
Olgemoeller, F., Waluza, J. J., Zeka, D., Gauld, J. S., Diggle, P. J., Read, J. M., Edwards, T., Msefula, C. L., Chirambo, A., Gordon, M. A., Thomson, E., Heyderman, R. S., Borgstein, E. & Feasey, N. A., 29/07/2020, In: Clinical Infectious Diseases. 71, Supplement 2, p. S96-S101 6 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Assessing the use of minimally invasive self-sampling at home for long-term monitoring of the microbiota within UK families
Nikolaou, E., German, E. L., Howard, A., Nabwera, H. M., Matope, A., Robinson, R., Shiham, F., Liatsikos, K., McNamara, C., Kattera, S., Carter, K., Parry, C. M., Read, J. M., Allen, S. J., Urban, B. C., Hawcutt, D. B., Hill, H., Collins, A. M. & Ferreira, D. M., 24/10/2023, In: Scientific Reports. 13, 1, 18201.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Trends, relationships and case attribution of antibiotic resistance between children and environmental sources in rural India
Mitchell, J., Purohit, M., Jewell, C. P., Read, J. M., Marrone, G., Diwan, V. & Stålsby Lundborg, C., 19/11/2021, In: Scientific Reports. 11, 1, 11 p., 22599.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
The use and reporting of airline passenger data for infectious disease modelling: a systematic review
Meslé, M. MI., Hall, I. M., Christley, R. M., Leach, S. & Read, J., 1/08/2019, In: Eurosurveillance. 24, 31, 18 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Estimating the potential for global dissemination of pandemic pathogens using the global airline network and healthcare development indices
Meslé, M. MI., Vivancos, R., Hall, I. M., Christley, R. M., Leach, S. & Read, J., 23/02/2022, In: Scientific Reports. 12, 9 p., 3070.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Exploring the density-dependent structure of blowfly populations by nonparametric additive modeling
Lingjaerde, O. C., Stenseth, N. C., Kristoffersen, A. B., Smith, R. H., Moe, S. J., Read, J. M., Daniels, S. & Simkiss, K., 09/2001, In: Ecology. 82, 9, p. 2645-2658 14 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Evidence for antigenic seniority in influenza A (H3N2) antibody responses in Southern China
Lessler, J., Riley, S., Read, J. M., Wang, S., Zhu, H., Smith, G. J. D., Guan, Y., Jiang, C. Q. & Cummings, D. A. T., 19/07/2012, In: PLoS Pathogens. 8, 7, 11 p., 1002802.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Location-specific patterns of exposure to recent pre-pandemic strains of influenza A in southern China
Lessler, J., Cummings, D. A. T., Read, J. M., Wang, S., Zhu, H., Smith, G. J. D., Guan, Y., Jiang, C. Q. & Riley, S., 9/08/2011, In: Nature Communications. 2, 9 p., 423.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
The use of satellite imagery in contact/travel questionnaires
Lessler, J., Read, J. M., Riley, S. R. & Cummings, D. A. T., 1/06/2009, In: American Journal of Epidemiology. 169, Suppl. 11, p. S59-S59 1 p., 236.
Research output: Contribution to Journal/Magazine › Meeting abstract › peer-review
Published
Social contacts and the locations in which they occur as risk factors for influenza infection
Kwok, K. O., Cowling, B. J., Wei, V. W. I., Wu, K. M., Read, J. M., Lessler, J., Cummings, D. A., Peiris, J. S. M. & Riley, S., 22/08/2014, In: Proceedings of the Royal Society B: Biological Sciences. 281, 1789, 9 p., 20140709.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Temporal variation of human encounters and the number of locations in which they occur: A longitudinal study of Hong Kong residents
Kwok, K. O., Cowling, B., Wei, V., Riley, S. & Read, J. M., 01/2018, In: Interface. 15, 138, 10 p., 20170838.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
A systematic review of transmission dynamic studies of methicillin-resistant Staphylococcus aureus in non-hospital residential facilities
Kwok, K. O., Read, J. M., Tang, A., Chen, H., Riley, S. & Kam, K. M., 18/04/2018, In: BMC Infectious Diseases. 18, 1, 13 p., 188.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Design of a study to examine contact mixing and acute respiratory infection in Ballabgarh, Haryana
Kumar, S., Amarchand, R., Gosain, M., Sharma, H., Dawood, F., Jain, S., Lafond, K., Widdowson, M-A., Read, J. M. & Krishnan, A., 04/2016, In: International Journal of Infectious Diseases. 45, Suppl. 1, p. 282 1 p.
Research output: Contribution to Journal/Magazine › Meeting abstract
Published
Who interacts with whom? Social mixing insights from a rural population in India
Kumar, S., Gosain, M., Sharma, H., Swetts, E., Amarchand, R., Kumar, R., Lafond, K. E., Dawood, F. S., Jain, S., Widdowson, M-A., Read, J. M. & Krishnan, A., 21/12/2018, In: PLoS ONE. 13, 12, 17 p., e0209039.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Estimating the Life Course of Influenza A (H3N2) Antibody Responses from Cross-Sectional Data
Kucharski, A. J., Lessler, J., Read, J. M., Zhu, H., Jiang, C. Q., Guan, Y., Cummings, D. A. T. & Riley, S., 3/03/2015, In: Plos Biology. 13, 3, 16 p., 1002082.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
The Contribution of Social Behaviour to the Transmission of Influenza A in a Human Population
Kucharski, A. J., Kwok, K. O., Wei, V. W. I., Cowling, B. J., Read, J. M., Lessler, J., Cummings, D. A. & Riley, S., 26/06/2014, In: PLoS Pathogens. 10, 6, 8 p., 1004206.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
E-pub ahead of print
Epidemiology of Human Seasonal Coronaviruses Among People With Mild and Severe Acute Respiratory Illness in Blantyre, Malawi, 2011-2017
Kovacs, D., Mambule, I., Read, J. M., Kiran, A., Chilombe, M., Bvumbwe, T., Aston, S., Menyere, M., Masina, M., Kamzati, M., Ganiza, T. N., Iuliano, D., McMorrow, M., Bar-Zeev, N., Everett, D., French, N. & Ho, A., 14/02/2024, (E-pub ahead of print) In: The Journal of infectious diseases.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020
Knight, G. M., Pham, T. M., Stimson, J., Funk, S., Jafari, Y., Pople, D., Evans, S., Yin, M., Brown, C. S., Bhattacharya, A., Hope, R., Semple, M. G., Read, J. M., Cooper, B. S. & Robotham, J. V., 18/06/2022, In: BMC Infectious Diseases. 22, 1, 14 p., 556.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
The invasion and coexistence of competing Wolbachia strains
Keeling, M. J., Jiggins, F. M. & Read, J. M., 10/2003, In: Heredity. 91, 4, p. 382-388 7 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Efficacy of contact tracing for the containment of the 2019 novel coronavirus (COVID-19)
Keeling, M. J., Hollingsworth, T. D. & Read, J. M., 8/09/2020, In: Journal of Epidemiology and Community Health. 74, 10, p. 861-866 6 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Cohort Profile: a study of influenza immunity in the urban and rural Guangzhou region of China: the Fluscape Study
Jiang, C. Q., Lessler, J., Kim, L., Kwok, K. O., Read, J. M., Wang, S., Tan, L., Hast, M., Zhu, H., Guan, Y., Riley, S. & Cummings, D. A. T., 04/2017, In: International Journal of Epidemiology. 46, 2, 7 p., e16.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Effectiveness of infection prevention and control interventions, excluding personal protective equipment, to prevent nosocomial transmission of SARS-CoV-2: a systematic review and call for action
Jafari, Y., Yin, M., Lim, C., Pople, D., Evans, S., Stimson, J., Pham, T. M., Read, J. M., Robotham, J. V., Cooper, B. S., Knight, G. M. & group, LSHTM. CMMID. COVID. W., 1/03/2022, In: Infection Prevention in Practice. 4, 1, 12 p., 100192.
Research output: Contribution to Journal/Magazine › Journal article › peer-review

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