Efficient Bayesian inference of instantaneous reproduction numbers at fine spatial scales, with an application to mapping and nowcasting the Covid‐19 epidemic in British local authorities

Teh, Y. W., Elesedy, B., He, B., Hutchinson, M., Zaidi, S., Bhoopchand, A., Paquet, U., Tomasev, N., Read, J. & Diggle, P. J., 8/12/2022, (E-pub ahead of print) In: Journal of the Royal Statistical Society: Series A Statistics in Society.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Enhancing disease surveillance with novel data streams: challenges and opportunities

Althouse, B. M., Scarpino, S. V., Meyers, L. A., Ayers, J. W., Bargsten, M., Baumbach, J., Brownstein, J. S., Castro, L., Clapham, H., Cummings, D. A. T., Del Valle, S., Eubank, S., Fairchild, G., Finelli, L., Generous, N., George, D., Harper, D. R., Hébert-Dufresne, L., Johansson, M. A., Konty, K., & 16 othersLipsitch, M., Milinovich, G., Miller, J. D., Nsoesie, E. O., Olson, D. R., Paul, M., Polgreen, P. M., Priedhorsky, R., Read, J. M., Rodríguez-Barraquer, I., Smith, D. J., Stefansen, C., Swerdlow, D. L., Thompson, D., Vespignani, A. & Wesolowski, A., 1/12/2015, In: EPJ Data Science. 4, 1, p. 1-8 8 p., 17.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Epidemic prediction and control in weighted networks

Eames, K. T. D., Read, J. M. & Edmunds, W. J., 03/2009, In: Epidemics. 1, 1, p. 70-76 7 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Epidemiology of Human Seasonal Coronaviruses Among People With Mild and Severe Acute Respiratory Illness in Blantyre, Malawi, 2011-2017

Kovacs, D., Mambule, I., Read, J. M., Kiran, A., Chilombe, M., Bvumbwe, T., Aston, S., Menyere, M., Masina, M., Kamzati, M., Ganiza, T. N., Iuliano, D., McMorrow, M., Bar-Zeev, N., Everett, D., French, N. & Ho, A., 14/02/2024, (E-pub ahead of print) In: The Journal of infectious diseases.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Estimating the Life Course of Influenza A (H3N2) Antibody Responses from Cross-Sectional Data

Kucharski, A. J., Lessler, J., Read, J. M., Zhu, H., Jiang, C. Q., Guan, Y., Cummings, D. A. T. & Riley, S., 3/03/2015, In: Plos Biology. 13, 3, 16 p., 1002082.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Estimating the potential for global dissemination of pandemic pathogens using the global airline network and healthcare development indices

Meslé, M. MI., Vivancos, R., Hall, I. M., Christley, R. M., Leach, S. & Read, J., 23/02/2022, In: Scientific Reports. 12, 9 p., 3070.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Estimation of reproduction numbers in real time: Conceptual and statistical challenges

JUNIPER Consortium, 30/11/2022, In: Journal of the Royal Statistical Society: Series A Statistics in Society. 185, 51, p. S112-S130 19 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

European red squirrel population dynamics driven by squirrelpox at a gray squirrel invasion interface

Chantrey, J., Dale, T. D., Read, J. M., White, S., Whitfield, F., Jones, D., McInnes, C. J. & Begon, M., 10/2014, In: Ecology and Evolution. 4, 19, p. 3788-3799 12 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Evidence for antigenic seniority in influenza A (H3N2) antibody responses in Southern China

Lessler, J., Riley, S., Read, J. M., Wang, S., Zhu, H., Smith, G. J. D., Guan, Y., Jiang, C. Q. & Cummings, D. A. T., 19/07/2012, In: PLoS Pathogens. 8, 7, 11 p., 1002802.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Exploring the density-dependent structure of blowfly populations by nonparametric additive modeling

Lingjaerde, O. C., Stenseth, N. C., Kristoffersen, A. B., Smith, R. H., Moe, S. J., Read, J. M., Daniels, S. & Simkiss, K., 09/2001, In: Ecology. 82, 9, p. 2645-2658 14 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Features of 20 133 UK patients in hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: Prospective observational cohort study

Docherty, A. B., Harrison, E. M., Green, C. A., Hardwick, H. E., Pius, R., Norman, L., Holden, K. A., Read, J. M., Dondelinger, F., Carson, G., Merson, L., Lee, J., Plotkin, D., Sigfrid, L., Halpin, S., Jackson, C., Gamble, C., Horby, P. W., Nguyen-Van-Tam, J. S., Ho, A., & 5 othersRussell, C. D., Dunning, J., Openshaw, P. J. M., Baillie, J. K. & Semple, M. G., 22/05/2020, In: BMJ. 369, 12 p., m1985.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

HeathMod: a model of the impact of seasonal grazing by sheep on upland heaths dominated by Calluna vulgaris (heather)

Read, J. M., Birch, C. P. D. & Milne, J. A., 06/2002, In: Biological Conservation. 105, 3, p. 279-292 14 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Hospital-acquired SARS-CoV-2 infection in the UK's first COVID-19 pandemic wave

Read, J., Green, C., Harrison, E., Docherty, A., Funk, S., Harrison, J., Girvan, M., Hardwick, H., Dunning, J., Nguyen-Van-Tam, J., Openshaw, P., Baillie, K. & Semple, M., 18/09/2021, In: The Lancet. 398, 10305, p. 1037-1038 2 p.

Research output: Contribution to Journal/Magazine › Letter › peer-review

Household transmission dynamics of seasonal human coronaviruses

Quandelacy, T. M., Hitchings, M. D. T., Lessler, J., Read, J. M., Vukotich, C., Azman, A. S., Salje, H., Zimmer, S., Gao, H., Zheteyeva, Y., Uzicanin, A. & Cummings, D. A. T., 1/05/2023, In: The Journal of infectious diseases. 227, 9, p. 1104-1112 9 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Influenza and other respiratory viral infections associated with absence from school among schoolchildren in Pittsburgh, Pennsylvania, USA: a cohort study

Read, J. M., Zimmer, S., Vukotich C., J., Schweizer, M. L., Galloway, D., Lingle, C., Yearwood, G., Calderone, P., Noble, E., Quadelacy, T., Grantz, K., Rinaldo, C., Gao, H., Rainey, J., Uzicanin, A. & Cummings, D. A. T., 22/03/2021, In: BMC Infectious Diseases. 21, 1, 10 p., 291.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

In-season and out-of-season variation of rotavirus genotype distribution and age of infection across 12 European countries before the introduction of routine vaccination, 2007/08 to 2012/13

Hungerford, D., Vivancos, R., Read, J. M., Pitzer, V. E., Cunliffe, N., French, N., Iturriza-Gómara, M. & EuroRotaNet network members, 14/01/2016, In: Eurosurveillance. 21, 2, 12 p., 5.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Intestinal Perforations Associated With a High Mortality and Frequent Complications During an Epidemic of Multidrug-resistant Typhoid Fever in Blantyre, Malawi

Olgemoeller, F., Waluza, J. J., Zeka, D., Gauld, J. S., Diggle, P. J., Read, J. M., Edwards, T., Msefula, C. L., Chirambo, A., Gordon, M. A., Thomson, E., Heyderman, R. S., Borgstein, E. & Feasey, N. A., 29/07/2020, In: Clinical Infectious Diseases. 71, Supplement 2, p. S96-S101 6 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Life course exposures continually shape antibody profiles and risk of seroconversion to influenza

Yang, B., Lessler, J., Zhu, H., Jiang, C. Q., Read, J. M., Hay, J. A., Kwok, K. O., Shen, R., Guan, Y., Riley, S. & Cummings, D. A. T., 23/07/2020, In: PLoS Pathogens. 16, 7, e1008635.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Location-specific patterns of exposure to recent pre-pandemic strains of influenza A in southern China

Lessler, J., Cummings, D. A. T., Read, J. M., Wang, S., Zhu, H., Smith, G. J. D., Guan, Y., Jiang, C. Q. & Riley, S., 9/08/2011, In: Nature Communications. 2, 9 p., 423.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Long term intrinsic cycling in human life course antibody responses to influenza A(H3N2): an observational and modeling study

Yang, B., García-Carreras, B., Lessler, J., Read, J. M., Zhu, H., Metcalf, C. J. E., Hay, J. A., Kwok, K. O., Shen, R., Jiang, C. Q., Guan, Y., Riley, S. & Cummings, D. A., 16/12/2022, In: eLife. 11, e81457.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Mapping social distancing measures to the reproduction number for COVID-19

Brooks-Pollock, E., Read, J. M., McLean, A. R., Keeling, M. J. & Danon, L., 19/07/2021, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 376, 1829, 7 p., 20200276.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Mental health conditions in people affected by filarial lymphoedema in Malawi: prevalence, associated risk factors and the impact of an enhanced self-care intervention

Barrett, C., Chiphwanya, J., Chaponda, L., Matipula, D. E., Turner, J. D., Taylor, M. J., Read, J. M. & Kelly-Hope, L. A., 20/12/2023, In: International Health. 15, Supplement_3, p. iii14-iii27

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Mitigating bias in observational vaccine effectiveness studies using simulated comparator populations: Application to rotavirus vaccination in the UK

Hungerford, D., Vivancos, R., Read, J. M., Bonnett, L. J., Bar-Zeev, N., Iturriza-Gómara, M., Cunliffe, N. A. & French, N., 29/10/2018, In: Vaccine. 36, 45, p. 6674-6682 9 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Modelling the impact of local reactive school closures on critical care provision during an influenza pandemic

House, T., Baguelin, M., Van Hoek, A. J., White, P. J., Sadique, Z., Eames, K., Read, J. M., Hens, N., Melegaro, A., Edmunds, W. J. & Keeling, M. J., 22/09/2011, In: Proceedings of the Royal Society B: Biological Sciences. 278, 1719, p. 2753-2760 8 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Modelling the impact of respiratory syncytial virus (RSV) vaccine and immunoprophylaxis strategies in New Zealand

Prasad, N., Read, J. M., Jewell, C., Waite, B., Trenholme, A. A., Huang, Q. S., Grant, C. C., Newbern, E. C. & Hogan, A. B., 13/07/2021, In: Vaccine. 39, 31, p. 4383-4390 8 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review