Roger Pickup - Publications & Outputs - Research Portal

Professor Roger Pickup

Professor of Environmental Microbiology and Health

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2008
Published
Studies on MWFs in America and Europe: The development of a quantitative real-time PCR assay for Mycobacterium immunogenum in metal working fluids
Rhodes, G., Fluri, A., Rfenacht, A. & Pickup, R., 22/05/2008.
Research output: Contribution to conference - Without ISBN/ISSN › Conference paper › peer-review
2007
Published
The biogeographical distribution of closely related freshwater sediment bacteria is determined by environmental selection
Gray, N. D., Brown, A., Nelson, D. R., Pickup, R. W., Rowan, A. K. & Head, I. M., 20/09/2007, In: ISME Journal. 1, 7, p. 596-605 10 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Biodegradation processes in a laboratory-scale groundwater contaminant plume assessed by fluorescence imaging and microbial analysis
Rees, H. C., Oswald, S. E., Banwart, S. A., Pickup, R. W. & Lerner, D. N., 15/06/2007, In: Applied and Environmental Microbiology. 73, 12, p. 3865-3876 12 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
The effect of bacterial prey species and their concentration on growth of the amoebae Acanthamoeba castellanii and Hartmannella vermiformis.
Pickup, Z. L., Pickup, R. & Parry, J. D., 04/2007, In: Applied and Environmental Microbiology. 73, 8, p. 2631-2634 4 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
A comparison of the growth and starvation responses of Acanthamoeba castellanii and Hartmannella vermiformis in the presence of suspended and attached Escherichia coli K12
Pickup, Z. L., Pickup, R. & Parry, J. D., 2007, In: FEMS Microbiology Ecology. 59, 3, p. 556-563 8 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Growth of Acanthamoeba castellanii and Hartmannella vermiformis on live, heat-killed and DTAF-stained bacterial prey
Pickup, Z. L., Pickup, R. & Parry, J. D., 2007, In: FEMS Microbiology Ecology. 61, 2, p. 264-272 9 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
2006
Published
Persistence of fermentative process to phenolic toxicity in groundwater
Wu, Y., Lerner, D. N., Banwart, S. A., Thornton, S. F. & Pickup, R. W., 30/11/2006, In: Journal of Environmental Quality. 35, 6, p. 2021-2025 5 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Mycobacterium avium subsp. paratuberculosis in lake catchments, in river water abstracted for domestic use, and in effluent from domestic sewage treatment works: Diverse opportunities for environmental cycling and human exposure
Pickup, R. W., Rhodes, G., Bull, T. J., Arnott, S., Sidi-Boumedine, K., Hurley, M. & Hermon-Taylor, J., 2/06/2006, In: Applied and Environmental Microbiology. 72, 6, p. 4067-4077 11 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Characterisation of cryoinjury in Euglena gracilis using flow-cytometry and cryomicroscopy
Fleck, R. A., Pickup, R. W., Day, J. G. & Benson, E. E., 30/04/2006, In: Cryobiology. 52, 2, p. 261-268 8 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Mechanisms for resistance in soil [7]
Pickup, R. W. & Rhodes, G., 28/04/2006, In: Science. 312, 5773, p. 529 1 p.
Research output: Contribution to Journal/Magazine › Letter › peer-review
Published
Mechanisms for soil resistance.
Pickup, R. & Rhodes, G., 28/04/2006, In: Science. 312, 5773, p. 529 1 p.
Research output: Contribution to Journal/Magazine › Letter › peer-review
Published
Replication and long-term persistence of bovine and human strains of Mycobacterium avium subsp. paratuberculosis within Acanthamoeba polyphaga
Mura, M., Bull, T. J., Evans, H., Sidi-Boumedine, K., McMinn, L., Rhodes, G., Pickup, R. & Hermon-Taylor, J., 1/01/2006, In: Applied and Environmental Microbiology. 72, 1, p. 854-859 6 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Review of the Predatory Bird Monitoring Scheme (PBMS).
Shore, R. F., Walker, L., Thomas, G. O., Barber, J. L., Martin, F. R., Jones, K. C., Beresford, N. A., Rowland, P. & Pickup, R. W., 2006, Unknown Publisher. (JNCC)
Research output: Book/Report/Proceedings › Book
2005
Published
Development of temporal temperature gradient electrophoresis for characterising methanogen diversity.
Earl, J., Pickup, R. W., Ritchie, D. A. & Edwards, C., 24/11/2005, In: Microbial Ecology. 50, 3, p. 327-336 10 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Role of microbial communities in aquatic ecosystems:Lakes
Pickup, R., 9/11/2005, Aquatic Ecological risks Assessment of fungicidal pesticides and biocides. Belgium: SETAC PRESS, p. 12-16 5 p.
Research output: Contribution in Book/Report/Proceedings - With ISBN/ISSN › Chapter
Published
Diversity of phage integrases in Enterobacteriaceae: Development of markers for environmental analysis of temperate phages
Balding, C., Bromley, S. A., Pickup, R. W. & Saunders, J. R., 31/10/2005, In: Environmental Microbiology. 7, 10, p. 1558-1567 10 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Mycobacterium avium subsp. paratuberculosis in the catchment area and water of the river Taff in South Wales, United Kingdom, and its potential relationship to clustering of Crohn's disease cases in the city of Cardiff
Pickup, R. W., Rhodes, G., Arnott, S., Sidi-Boumedine, K., Bull, T. J., Weightman, A., Hurley, M. & Hermon-Taylor, J., 1/04/2005, In: Applied and Environmental Microbiology. 71, 4, p. 2130-2139 10 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Seston capture by Hydropsyche siltalai and the accuracy of capture efficiency estimates
Brown, S. A., Ruxton, G. D., Pickup, R. W. & Humphries, S., 31/01/2005, In: Freshwater Biology. 50, 1, p. 113-126 14 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
2004
Published
Complete nucleotide sequence of the conjugative tetracycline resistance plasmid pFBAOT6, a member of a group of IncU plasmids with global ubiquity
Rhodes, G., Parkhill, J., Bird, C., Ambrose, K., Jones, M. C., Huys, G., Swings, J. & Pickup, R. W., 31/12/2004, In: Applied and Environmental Microbiology. 70, 12, p. 7497-7510 14 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Adaptation of sympatric Achromatium spp. to different redox conditions as a mechanism for coexistence of functionally similar sulphur bacteria
Gray, N. D., Comaskey, D., Miskin, I. P., Pickup, R. W., Suzuki, K. & Head, I. M., 31/07/2004, In: Environmental Microbiology. 6, 7, p. 669-677 9 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Effect of Trophic Status on the Culturability and Activity of Bacteria from a Range of Lakes in the English Lake District
Porter, J., Morris, S. A. & Pickup, R. W., 1/04/2004, In: Applied and Environmental Microbiology. 70, 4, p. 2072-2078 7 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
2003
Published
Analysis of methanogen diversity in a hypereutrophic lake using PCR-RFLP analysis of mcr sequences
Earl, J., Hall, G., Pickup, R. W., Ritchie, D. A. & Edwards, C., 31/08/2003, In: Microbial Ecology. 46, 2, p. 270-278 9 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Mycobacterial interspersed repetitive units (MIRU) differentiate Mycobacterium avium subspecies paratuberculosis from other species of the Mycobacterium avium complex
Bull, T. J., Sidi-Boumedine, K., McMinn, E. J., Stevenson, K., Pickup, R. & Hermon-Taylor, J., 31/08/2003, In: Molecular and Cellular Probes. 17, 4, p. 157-164 8 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Detection and verification of Mycobacterium avium subsp. paratuberculosis in fresh ileocolonic mucosal biopsy specimens from individuals with and without Crohn's disease
Bull, T. J., McMinn, E. J., Sidi-Boumedine, K., Skull, A., Durkin, D., Neild, P., Rhodes, G., Pickup, R. & Hermon-Taylor, J., 1/07/2003, In: Journal of Clinical Microbiology. 41, 7, p. 2915-2923 9 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Monitoring bacterial pathogens in the environment: Advantages of a multilayered approach
Pickup, R. W., Rhodes, G. & Hermon-Taylor, J., 30/06/2003, In: Current Opinion in Biotechnology. 14, 3, p. 319-325 7 p.
Research output: Contribution to Journal/Magazine › Review article › peer-review
2002
Published
Salmonella typhimurium displays cyclical patterns of sensitivity to UV-C killing during prolonged incubation in the stationary phase of growth
Child, M., Strike, P., Pickup, R. & Edwards, C., 16/07/2002, In: FEMS Microbiology Letters. 213, 1, p. 81-85 5 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
A phenol-contaminated groundwater site: A microbiological perspective
Pickup, R. W., Mallinson, H. E. H., Rhodes, G., Alamillo, M. L., Thornton, S. F. & Lerner, D. N., 2002, In: IAHS-AISH Proceedings and Reports. 275, p. 251-256 6 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
2001
Published
Comparison of the antimicrobial tolerance of oxytetracycline-resistant heterotrophic bacteria isolated from hospital sewage and freshwater fishfarm water in Belgium
Huys, G., Gevers, D., Temmerman, R., Cnockaert, M., Denys, R., Rhodes, G., Pickup, R., McGann, P., Hiney, M., Smith, P. & Swings, J., 31/12/2001, In: Systematic and Applied Microbiology. 24, 1, p. 122-130 9 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Biogeochemical characterisation of a coal tar distillate plume
Williams, G. M., Pickup, R. W., Thornton, S. F., Lerner, D. N., Mallinson, H. E. H., Moore, Y. & White, C., 15/12/2001, In: Journal of Contaminant Hydrology. 53, 3-4, p. 175-197 23 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Microbiological analysis of multi-level borehole samples from a contaminated groundwater system
Pickup, R. W., Rhodes, G., Alamillo, M. L., Mallinson, H. E. H., Thornton, S. F. & Lerner, D. N., 15/12/2001, In: Journal of Contaminant Hydrology. 53, 3-4, p. 269-284 16 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
A novel method for the isolation of motile bacteria using gradient culture systems
Thomson, R., Pickup, R. & Porter, J., 31/08/2001, In: Journal of Microbiological Methods. 46, 2, p. 141-147 7 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
A comparison of ammonia-oxidiser populations in eutrophic and oligotrophic basins of a large freshwater lake
Whitby, C. B., Saunders, J. R., Pickup, R. W. & McCarthy, A. J., 30/06/2001, In: Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 79, 2, p. 179-188 10 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
¹³C incorporation into DNA as a means of identifying the active components of ammonia-oxidizer populations
Whitby, C. B., Hall, G., Pickup, R., Saunders, J. R., Ineson, P., Parekh, N. R. & McCarthy, A., 1/06/2001, In: Letters in Applied Microbiology. 32, 6, p. 398-401 4 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
The potential harbouring of coliform bacteria by protozoa in biofilms.
English, J., Pickup, R. & Parry, J. D., 2001, Biofilm community interactions : chance or necessity?. Gilbert, P., Allison, D., Brading, M., Verran, J. & Walker, J. (eds.). Cardiff: Bioline, p. 271-279 9 p.
Research output: Contribution in Book/Report/Proceedings - With ISBN/ISSN › Chapter
2000
Published
Characterization of oxytetracycline-resistant heterotrophic bacteria originating from hospital and freshwater fishfarm environments England and Ireland
Huys, G., Rhodes, G., McGann, P., Denys, R., Pickup, R., Hiney, M., Smith, P. & Swings, J., 31/12/2000, In: Systematic and Applied Microbiology. 23, 4, p. 599-606 8 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Ineffective natural attenuation of degradable organic compounds in a phenol-contaminated aquifer
Lerner, D. N., Thornton, S. F., Spence, M. J., Banwart, S. A., Bottrell, S. H., Higgo, J. J., Mallinson, H. E. H., Pickup, R. W. & Williams, G. M., 30/11/2000, In: Ground Water. 38, 6, p. 922-928 7 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Detection and distribution of insertion sequence 1 (IS1)-containing bacteria in the freshwater environment
Rhodes, G., Saunders, J. R. & Pickup, R. W., 1/10/2000, In: FEMS Microbiology Ecology. 34, 1, p. 81-90 10 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Use of combined microautoradiography and fluorescence in situ hybridization to determine carbon metabolism in mixed natural communities of uncultured bacteria from the genus Achromatium
Gray, N. D., Howarth, R., Pickup, R. W., Jones, J. G. & Head, I. M., 1/10/2000, In: Applied and Environmental Microbiology. 66, 10, p. 4518-4522 5 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Nucleic acid-based fluorescent probes in microbial ecology: Application of flow cytometry
Porter, J. & Pickup, R. W., 30/09/2000, In: Journal of Microbiological Methods. 42, 1, p. 75-79 5 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Distribution of oxytetracycline resistance plasmids between aeromonads in hospital and aquaculture environments: Implication of Tn1721 in dissemination of the tetracycline resistance determinant Tet A
Rhodes, G., Huys, G., Swings, J., McGann, P., Hiney, M., Smith, P. & Pickup, R. W., 1/09/2000, In: Applied and Environmental Microbiology. 66, 9, p. 3883-3890 8 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons
Osborn, A. M., da Silva Tatley, F. M., Steyn, L. M., Pickup, R. W. & Saunders, J. R., 1/09/2000, In: Microbiology. 146, 9, p. 2267-2275 9 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Changes in viability and macromolecular content of long-term batch cultures of Salmonella typhimurium measured by flow cytometry
Turner, K., Porter, J., Pickup, R. & Edwards, C., 31/07/2000, In: Journal of Applied Microbiology. 89, 1, p. 90-99 10 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments
Osborn, A. M., Pickup, R. W. & Saunders, J. R., 5/05/2000, In: FEMS Microbiology Letters. 186, 2, p. 203-208 6 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Achromatium oxaliferum: Understanding the unmistakable
Head, I. M., Gray, N. D., Howarth, R., Pickup, R. W., Clarke, K. J. & Jones, J. G., 1/01/2000, In: Advances in Microbial Ecology. 16, 1, p. 1-40 40 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
1999
Published
Natural communities of Achromatium oxaliferum comprise genetically, morphologically, and ecologically distinct subpopulations
Gray, N. D., Howarth, R., Rowan, A., Pickup, R. W., Jones, J. G. & Head, I. M., 1/11/1999, In: Applied and Environmental Microbiology. 65, 11, p. 5089-5099 11 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Phylogenetic differentiation of two closely related Nitrosomonas spp. that inhabit different sediment environments in an oligotrophic freshwater lake
Whitby, C. B., Saunders, J. R., Rodriguez, J., Pickup, R. W. & McCarthy, A., 1/11/1999, In: Applied and Environmental Microbiology. 65, 11, p. 4855-4862 8 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Substrate uptake by uncultured bacteria from the genus Achromatium determined by microautoradiography
Gray, N. D., Howarth, R., Pickup, R. W., Jones, J. G. & Head, I. M., 1/11/1999, In: Applied and Environmental Microbiology. 65, 11, p. 5100-5106 7 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Molecular ecological analysis of methanogens and methanotrophs in blanket bog peat
McDonald, I. R., Upton, M., Hall, G., Pickup, R. W., Edwards, C., Saunders, J. R., Ritchie, D. A. & Murrell, J. C., 31/10/1999, In: Microbial Ecology. 38, 3, p. 225-233 9 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Phylogenetic relationships of filamentous sulfur bacteria (Thiothrix spp. and Eikelboom type 021N bacteria) isolated from wastewater-treatment plants and description of Thiothrix eikelboomii sp. nov., Thiothrix unzii sp. nov., Thiothrix fructosivorans sp. nov. and Thiothrix defluvii sp. nov.
Howarth, R., Unz, R. F., Seviour, E. M., Seviour, R. J., Blackall, L. L., Pickup, R. W., Jones, J. G., Yaguchi, J. & Head, I. M., 1/10/1999, In: International Journal of Systematic Bacteriology. 49, 4, p. 1817-1827 11 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Published
Magnetic particle–based separation techniques for monitoring bacteria from natural environments
Porter, J. & Pickup, R., 21/01/1999, In: Methods in Biotechnology. 12, p. 75-96 22 p.
Research output: Contribution to Journal/Magazine › Journal article › peer-review

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Professor Roger Pickup

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