Final published version
Licence: CC BY
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Research output: Contribution to Journal/Magazine › Journal article › peer-review
}
TY - JOUR
T1 - Assembly processes inferred from eDNA surveys of a pond metacommunity are consistent with known species ecologies
AU - Cai, Wang
AU - Pichler, Maximilian
AU - Biggs, Jeremy
AU - Nicolet, Pascale
AU - Ewald, Naomi
AU - Griffiths, Richard A.
AU - Bush, Alex
AU - Leibold, Mathew A.
AU - Hartig, Florian
AU - Yu, Douglas W.
PY - 2025/2/4
Y1 - 2025/2/4
N2 - Technological advances are enabling ecologists to conduct large‐scale and structured community surveys. However, it is unclear how best to extract information from these novel community data. We metabarcoded 48 vertebrate species from their eDNA in 320 ponds across England and applied the ‘internal structure' approach, which uses joint species distribution models (JSDMs) to explain compositions as the result of four metacommunity processes: environmental filtering, dispersal, species interactions, and stochasticity. We confirm that environmental filtering plays an important role in community assembly, and find that species' estimated environmental preferences are consistent with known ecologies. We also detect negative biotic covariances between fish and amphibians after controlling for divergent environmental preferences, consistent with predator–prey interactions (likely mediated by predator avoidance behaviour), and we detect high spatial autocorrelation for the palmate newt, consistent with its hypothesised relict distribution. Promisingly, ecologically and spatially distinctive sites are better explained by their environmental covariates and geographic locations, respectively, revealing sites where environmental filtering and dispersal limitation act more strongly. These results are consistent with the recent proposal that applying JSDMs to species distribution patterns can help reveal the relative importance of environmental filtering, dispersal limitation, and biotic interaction processes for individual sites and species. Our results also highlight the value of the modern interpretation of metacommunity ecology, which embraces the fact that assembly processes differ among species and sites. We discuss how novel community data allow for several study design improvements that will strengthen the inference of metacommunity assembly processes from observational data.
AB - Technological advances are enabling ecologists to conduct large‐scale and structured community surveys. However, it is unclear how best to extract information from these novel community data. We metabarcoded 48 vertebrate species from their eDNA in 320 ponds across England and applied the ‘internal structure' approach, which uses joint species distribution models (JSDMs) to explain compositions as the result of four metacommunity processes: environmental filtering, dispersal, species interactions, and stochasticity. We confirm that environmental filtering plays an important role in community assembly, and find that species' estimated environmental preferences are consistent with known ecologies. We also detect negative biotic covariances between fish and amphibians after controlling for divergent environmental preferences, consistent with predator–prey interactions (likely mediated by predator avoidance behaviour), and we detect high spatial autocorrelation for the palmate newt, consistent with its hypothesised relict distribution. Promisingly, ecologically and spatially distinctive sites are better explained by their environmental covariates and geographic locations, respectively, revealing sites where environmental filtering and dispersal limitation act more strongly. These results are consistent with the recent proposal that applying JSDMs to species distribution patterns can help reveal the relative importance of environmental filtering, dispersal limitation, and biotic interaction processes for individual sites and species. Our results also highlight the value of the modern interpretation of metacommunity ecology, which embraces the fact that assembly processes differ among species and sites. We discuss how novel community data allow for several study design improvements that will strengthen the inference of metacommunity assembly processes from observational data.
KW - metabarcoding
KW - macroecology
KW - joint species distribution model (JSDM)
KW - Triturus cristatus
KW - biodiversity
KW - Aquatic eDNA
U2 - 10.1111/ecog.07461
DO - 10.1111/ecog.07461
M3 - Journal article
JO - Ecography
JF - Ecography
SN - 0906-7590
ER -