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Breast cancer diagnosis from histopathology images using deep neural network and XGBoost

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Breast cancer diagnosis from histopathology images using deep neural network and XGBoost. / Maleki, Alireza; Raahemi, Mohammad; Nasiri, Hamid.
In: Biomedical Signal Processing and Control, Vol. 86, No. Part A, 105152, 01.09.2023.

Research output: Contribution to Journal/MagazineJournal articlepeer-review

Harvard

Maleki, A, Raahemi, M & Nasiri, H 2023, 'Breast cancer diagnosis from histopathology images using deep neural network and XGBoost', Biomedical Signal Processing and Control, vol. 86, no. Part A, 105152. https://doi.org/10.1016/j.bspc.2023.105152

APA

Maleki, A., Raahemi, M., & Nasiri, H. (2023). Breast cancer diagnosis from histopathology images using deep neural network and XGBoost. Biomedical Signal Processing and Control, 86(Part A), Article 105152. https://doi.org/10.1016/j.bspc.2023.105152

Vancouver

Maleki A, Raahemi M, Nasiri H. Breast cancer diagnosis from histopathology images using deep neural network and XGBoost. Biomedical Signal Processing and Control. 2023 Sept 1;86(Part A):105152. doi: 10.1016/j.bspc.2023.105152

Author

Maleki, Alireza ; Raahemi, Mohammad ; Nasiri, Hamid. / Breast cancer diagnosis from histopathology images using deep neural network and XGBoost. In: Biomedical Signal Processing and Control. 2023 ; Vol. 86, No. Part A.

Bibtex

@article{286e9e581ed34dc5a2f411694145010b,
title = "Breast cancer diagnosis from histopathology images using deep neural network and XGBoost",
abstract = "Background and Objective: Globally, breast cancer is one of the most common diseases among women. As a result of the disadvantages of manual analysis, computer-aided diagnosis (CAD) systems are being used to detect images because of their time-consuming and trustworthy capability. With deep learning techniques based on image analysis and classification, CAD systems can efficiently classify images. Methods: This paper proposes methodologies for enhancing the speed and precision of histopathological image classification, which is a challenge for therapeutic measures. We assess three different classifiers and six pre-trained networks. A pre-trained model is used to extract features from images and then feed those extracted features into the extreme gradient boosting (XGBoost) method, which is selected as the final classifier. Our methodology is based on transfer learning and uses histopathological images as input. To evaluate the performance of the proposed method, we use the BreakHis dataset, which presents histopathology images in four magnification levels, i.e., 40X, 100X, 200X, and 400X. Results and Conclusion: The accuracies achieved by the proposed method in 40X, 100X, 200X, and 400X magnifications are 93.6%, 91.3%, 93.8%, and 89.1%, respectively. After analyzing the accuracy achieved in this study, the final method proposed combines the DenseNet201 model as a feature extractor with XGBoost as a classifier.",
keywords = "BreakHis, Breast cancer, DenseNet201, Transfer learning, XGBoost",
author = "Alireza Maleki and Mohammad Raahemi and Hamid Nasiri",
note = "Publisher Copyright: {\textcopyright} 2023 Elsevier Ltd",
year = "2023",
month = sep,
day = "1",
doi = "10.1016/j.bspc.2023.105152",
language = "English",
volume = "86",
journal = "Biomedical Signal Processing and Control",
issn = "1746-8094",
publisher = "Elsevier BV",
number = "Part A",

}

RIS

TY - JOUR

T1 - Breast cancer diagnosis from histopathology images using deep neural network and XGBoost

AU - Maleki, Alireza

AU - Raahemi, Mohammad

AU - Nasiri, Hamid

N1 - Publisher Copyright: © 2023 Elsevier Ltd

PY - 2023/9/1

Y1 - 2023/9/1

N2 - Background and Objective: Globally, breast cancer is one of the most common diseases among women. As a result of the disadvantages of manual analysis, computer-aided diagnosis (CAD) systems are being used to detect images because of their time-consuming and trustworthy capability. With deep learning techniques based on image analysis and classification, CAD systems can efficiently classify images. Methods: This paper proposes methodologies for enhancing the speed and precision of histopathological image classification, which is a challenge for therapeutic measures. We assess three different classifiers and six pre-trained networks. A pre-trained model is used to extract features from images and then feed those extracted features into the extreme gradient boosting (XGBoost) method, which is selected as the final classifier. Our methodology is based on transfer learning and uses histopathological images as input. To evaluate the performance of the proposed method, we use the BreakHis dataset, which presents histopathology images in four magnification levels, i.e., 40X, 100X, 200X, and 400X. Results and Conclusion: The accuracies achieved by the proposed method in 40X, 100X, 200X, and 400X magnifications are 93.6%, 91.3%, 93.8%, and 89.1%, respectively. After analyzing the accuracy achieved in this study, the final method proposed combines the DenseNet201 model as a feature extractor with XGBoost as a classifier.

AB - Background and Objective: Globally, breast cancer is one of the most common diseases among women. As a result of the disadvantages of manual analysis, computer-aided diagnosis (CAD) systems are being used to detect images because of their time-consuming and trustworthy capability. With deep learning techniques based on image analysis and classification, CAD systems can efficiently classify images. Methods: This paper proposes methodologies for enhancing the speed and precision of histopathological image classification, which is a challenge for therapeutic measures. We assess three different classifiers and six pre-trained networks. A pre-trained model is used to extract features from images and then feed those extracted features into the extreme gradient boosting (XGBoost) method, which is selected as the final classifier. Our methodology is based on transfer learning and uses histopathological images as input. To evaluate the performance of the proposed method, we use the BreakHis dataset, which presents histopathology images in four magnification levels, i.e., 40X, 100X, 200X, and 400X. Results and Conclusion: The accuracies achieved by the proposed method in 40X, 100X, 200X, and 400X magnifications are 93.6%, 91.3%, 93.8%, and 89.1%, respectively. After analyzing the accuracy achieved in this study, the final method proposed combines the DenseNet201 model as a feature extractor with XGBoost as a classifier.

KW - BreakHis

KW - Breast cancer

KW - DenseNet201

KW - Transfer learning

KW - XGBoost

U2 - 10.1016/j.bspc.2023.105152

DO - 10.1016/j.bspc.2023.105152

M3 - Journal article

AN - SCOPUS:85162128992

VL - 86

JO - Biomedical Signal Processing and Control

JF - Biomedical Signal Processing and Control

SN - 1746-8094

IS - Part A

M1 - 105152

ER -