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Chromosome genome assembly and whole genome sequencing of 110 individuals of Conogethes punctiferalis (Guenée)

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Chromosome genome assembly and whole genome sequencing of 110 individuals of Conogethes punctiferalis (Guenée). / Gao, B.; Peng, Y.; Jin, M. et al.
In: Scientific Data, Vol. 10, No. 1, 805, 16.11.2023.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Harvard

Gao, B, Peng, Y, Jin, M, Zhang, L, Han, X, Wu, C, Yuan, H, Awawing, A, Zheng, F, Li, X & Xiao, Y 2023, 'Chromosome genome assembly and whole genome sequencing of 110 individuals of Conogethes punctiferalis (Guenée)', Scientific Data, vol. 10, no. 1, 805. https://doi.org/10.1038/s41597-023-02730-x

APA

Gao, B., Peng, Y., Jin, M., Zhang, L., Han, X., Wu, C., Yuan, H., Awawing, A., Zheng, F., Li, X., & Xiao, Y. (2023). Chromosome genome assembly and whole genome sequencing of 110 individuals of Conogethes punctiferalis (Guenée). Scientific Data, 10(1), Article 805. https://doi.org/10.1038/s41597-023-02730-x

Vancouver

Gao B, Peng Y, Jin M, Zhang L, Han X, Wu C et al. Chromosome genome assembly and whole genome sequencing of 110 individuals of Conogethes punctiferalis (Guenée). Scientific Data. 2023 Nov 16;10(1):805. doi: 10.1038/s41597-023-02730-x

Author

Gao, B. ; Peng, Y. ; Jin, M. et al. / Chromosome genome assembly and whole genome sequencing of 110 individuals of Conogethes punctiferalis (Guenée). In: Scientific Data. 2023 ; Vol. 10, No. 1.

Bibtex

@article{0db0453cc9a94c97806fa36720582eea,
title = "Chromosome genome assembly and whole genome sequencing of 110 individuals of Conogethes punctiferalis (Guen{\'e}e)",
abstract = "The yellow peach moth, Conogethes punctiferalis, is a highly polyphagous pest widespread in eastern and southern Asia. It demonstrates a unique ability to adapt to rotten host fruits and displays resistance to pathogenic microorganisms, including fungi. However, the lack of available genomic resources presents a challenge in comprehensively understanding the evolution of its innate immune genes. Here, we report a high-quality chromosome-level reference genome for C. punctiferalis utilizing PacBio HiFi sequencing and Hi-C technology. The genome assembly was 494 Mb in length with a contig N50 of 3.25 Mb. We successfully anchored 1,226 contigs to 31 pseudochromosomes. Our BUSCO analysis further demonstrated a gene coverage completeness of 96.3% in the genome assembly. Approximately 43% repeat sequences and 21,663 protein-coding genes were identified. In addition, we resequenced 110 C. punctiferalis individuals from east China, achieving an average coverage of 18.4 × and identifying 5.8 million high-quality SNPs. This work provides a crucial resource for understanding the evolutionary mechanism of C. punctiferalis{\textquoteright} innate immune system and will help in developing new antibacterial drugs.",
author = "B. Gao and Y. Peng and M. Jin and L. Zhang and X. Han and C. Wu and H. Yuan and A. Awawing and F. Zheng and X. Li and Y. Xiao",
year = "2023",
month = nov,
day = "16",
doi = "10.1038/s41597-023-02730-x",
language = "English",
volume = "10",
journal = "Scientific Data",
issn = "2052-4463",
publisher = "Nature Publishing Group",
number = "1",

}

RIS

TY - JOUR

T1 - Chromosome genome assembly and whole genome sequencing of 110 individuals of Conogethes punctiferalis (Guenée)

AU - Gao, B.

AU - Peng, Y.

AU - Jin, M.

AU - Zhang, L.

AU - Han, X.

AU - Wu, C.

AU - Yuan, H.

AU - Awawing, A.

AU - Zheng, F.

AU - Li, X.

AU - Xiao, Y.

PY - 2023/11/16

Y1 - 2023/11/16

N2 - The yellow peach moth, Conogethes punctiferalis, is a highly polyphagous pest widespread in eastern and southern Asia. It demonstrates a unique ability to adapt to rotten host fruits and displays resistance to pathogenic microorganisms, including fungi. However, the lack of available genomic resources presents a challenge in comprehensively understanding the evolution of its innate immune genes. Here, we report a high-quality chromosome-level reference genome for C. punctiferalis utilizing PacBio HiFi sequencing and Hi-C technology. The genome assembly was 494 Mb in length with a contig N50 of 3.25 Mb. We successfully anchored 1,226 contigs to 31 pseudochromosomes. Our BUSCO analysis further demonstrated a gene coverage completeness of 96.3% in the genome assembly. Approximately 43% repeat sequences and 21,663 protein-coding genes were identified. In addition, we resequenced 110 C. punctiferalis individuals from east China, achieving an average coverage of 18.4 × and identifying 5.8 million high-quality SNPs. This work provides a crucial resource for understanding the evolutionary mechanism of C. punctiferalis’ innate immune system and will help in developing new antibacterial drugs.

AB - The yellow peach moth, Conogethes punctiferalis, is a highly polyphagous pest widespread in eastern and southern Asia. It demonstrates a unique ability to adapt to rotten host fruits and displays resistance to pathogenic microorganisms, including fungi. However, the lack of available genomic resources presents a challenge in comprehensively understanding the evolution of its innate immune genes. Here, we report a high-quality chromosome-level reference genome for C. punctiferalis utilizing PacBio HiFi sequencing and Hi-C technology. The genome assembly was 494 Mb in length with a contig N50 of 3.25 Mb. We successfully anchored 1,226 contigs to 31 pseudochromosomes. Our BUSCO analysis further demonstrated a gene coverage completeness of 96.3% in the genome assembly. Approximately 43% repeat sequences and 21,663 protein-coding genes were identified. In addition, we resequenced 110 C. punctiferalis individuals from east China, achieving an average coverage of 18.4 × and identifying 5.8 million high-quality SNPs. This work provides a crucial resource for understanding the evolutionary mechanism of C. punctiferalis’ innate immune system and will help in developing new antibacterial drugs.

U2 - 10.1038/s41597-023-02730-x

DO - 10.1038/s41597-023-02730-x

M3 - Journal article

VL - 10

JO - Scientific Data

JF - Scientific Data

SN - 2052-4463

IS - 1

M1 - 805

ER -