Accepted author manuscript, 1.1 MB, PDF document
Available under license: CC BY: Creative Commons Attribution 4.0 International License
Final published version
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Research output: Contribution to Journal/Magazine › Journal article › peer-review
}
TY - JOUR
T1 - Field-based high-throughput plant phenotyping reveals the temporal patterns of quantitative trait loci associated with stress-responsive traits in cotton
AU - Pauli, Duke
AU - Andrade-Sanchez, Pedro
AU - Carmo-Silva, Ana Elizabete
AU - Gazave, Elodie
AU - French, Andrew
AU - Heun, John
AU - Hunsaker, Douglas
AU - Lipka, Alexander
AU - Setter, Tim
AU - Strand, Robert
AU - Thorp, Kelly
AU - Wang, Sam
AU - White, Jeffrey
AU - Gore, Michael
PY - 2016/4/1
Y1 - 2016/4/1
N2 - The application of high-throughput plant phenotyping (HTPP) to continuously study plant populations under relevant growing conditions creates the possibility to more efficiently dissect the genetic basis of dynamic adaptive traits. Towards this end, we employed a field-based HTPP system that deployed sets of sensors to simultaneously measure canopy temperature, reflectance, and height on a cotton (Gossypium hirsutum L.) recombinant inbred line mapping population. The evaluation trials were conducted under well-watered and water-limited conditions in a replicated field experiment at a hot, arid location in central Arizona, with trait measurements taken at different times on multiple days across three years. Canopy temperature, normalized difference vegetation index (NDVI), height, and leaf area index (LAI) displayed moderate to high broad-sense heritabilities as well as varied interactions among genotypes with water regime and time of day. Distinct temporal patterns of quantitative trait loci (QTL) expression were mostly observed for the more dynamic HTPP canopy traits, canopy temperature and NDVI, and varied across plant developmental stages. In addition, the strength of correlation between HTPP canopy and agronomic traits such as lint yield displayed a time-dependent relationship. We also found that the position of some QTL controlling HTPP canopy traits were shared with agronomic and physiological traits. This work demonstrates the novel use of a field-based, HTPP system to study the genetic basis of stress-adaptive traits in cotton, and these results have the potential to facilitate the development of stress-resilient cotton cultivars.
AB - The application of high-throughput plant phenotyping (HTPP) to continuously study plant populations under relevant growing conditions creates the possibility to more efficiently dissect the genetic basis of dynamic adaptive traits. Towards this end, we employed a field-based HTPP system that deployed sets of sensors to simultaneously measure canopy temperature, reflectance, and height on a cotton (Gossypium hirsutum L.) recombinant inbred line mapping population. The evaluation trials were conducted under well-watered and water-limited conditions in a replicated field experiment at a hot, arid location in central Arizona, with trait measurements taken at different times on multiple days across three years. Canopy temperature, normalized difference vegetation index (NDVI), height, and leaf area index (LAI) displayed moderate to high broad-sense heritabilities as well as varied interactions among genotypes with water regime and time of day. Distinct temporal patterns of quantitative trait loci (QTL) expression were mostly observed for the more dynamic HTPP canopy traits, canopy temperature and NDVI, and varied across plant developmental stages. In addition, the strength of correlation between HTPP canopy and agronomic traits such as lint yield displayed a time-dependent relationship. We also found that the position of some QTL controlling HTPP canopy traits were shared with agronomic and physiological traits. This work demonstrates the novel use of a field-based, HTPP system to study the genetic basis of stress-adaptive traits in cotton, and these results have the potential to facilitate the development of stress-resilient cotton cultivars.
KW - NDVI
KW - QTL
KW - canopy temperature
KW - field-based HTPP
KW - stress response
U2 - 10.1534/g3.115.023515
DO - 10.1534/g3.115.023515
M3 - Journal article
VL - 6
SP - 865
EP - 879
JO - G3: Genes, Genomes, Genetics
JF - G3: Genes, Genomes, Genetics
IS - 4
ER -