Research output: Contribution to Journal/Magazine › Journal article › peer-review
Research output: Contribution to Journal/Magazine › Journal article › peer-review
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TY - JOUR
T1 - Small regions of preferential codon usage and their effect on overall codon bias
T2 - the case of the plp gene
AU - Gatherer, Derek
AU - McEwan, Neil R.
PY - 1997/9
Y1 - 1997/9
N2 - Preferential codon usage within synonymous groups (codon bias), is hypothesised to be a consequence of either mutational pressure or translational selection. This paper examines PLP and DM-20, two transcripts differentially spliced from the pip gene, using a variety of previously described indices measuring codon bias as well as a novel index for quantifying the response to directional mutation pressure. The results demonstrate that small regions of extreme codon bias may have appreciable effects on the quantification of total bias, and that this effect may be either an increase or a decrease depending which index is used.
AB - Preferential codon usage within synonymous groups (codon bias), is hypothesised to be a consequence of either mutational pressure or translational selection. This paper examines PLP and DM-20, two transcripts differentially spliced from the pip gene, using a variety of previously described indices measuring codon bias as well as a novel index for quantifying the response to directional mutation pressure. The results demonstrate that small regions of extreme codon bias may have appreciable effects on the quantification of total bias, and that this effect may be either an increase or a decrease depending which index is used.
KW - MYELIN PROTEOLIPID PROTEIN
KW - TRANSLATIONAL SELECTION
KW - MESSENGER-RNA
KW - JIMPY MUTANT
KW - EXPRESSION
KW - MOUSE
M3 - Journal article
VL - 43
SP - 107
EP - 114
JO - Biochemistry and Molecular Biology International
JF - Biochemistry and Molecular Biology International
SN - 1039-9712
IS - 1
ER -