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The Acoustic Index User's Guide: A practical manual for defining, generating and understanding current and future acoustic indices

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The Acoustic Index User's Guide: A practical manual for defining, generating and understanding current and future acoustic indices. / Bradfer‐Lawrence, Tom; Duthie, Brad; Abrahams, Carlos et al.
In: Methods in Ecology and Evolution, 28.05.2024.

Research output: Contribution to Journal/MagazineJournal articlepeer-review

Harvard

Bradfer‐Lawrence, T, Duthie, B, Abrahams, C, Adam, M, Barnett, RJ, Beeston, A, Darby, J, Dell, B, Gardner, N, Gasc, A, Heath, B, Howells, N, Janson, M, Kyoseva, MV, Luypaert, T, Metcalf, OC, Nousek‐McGregor, AE, Poznansky, F, Ross, SRPJ, Sethi, S, Smyth, S, Waddell, E & Froidevaux, JSP 2024, 'The Acoustic Index User's Guide: A practical manual for defining, generating and understanding current and future acoustic indices', Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210x.14357

APA

Bradfer‐Lawrence, T., Duthie, B., Abrahams, C., Adam, M., Barnett, R. J., Beeston, A., Darby, J., Dell, B., Gardner, N., Gasc, A., Heath, B., Howells, N., Janson, M., Kyoseva, MV., Luypaert, T., Metcalf, O. C., Nousek‐McGregor, A. E., Poznansky, F., Ross, S. R. P. J., ... Froidevaux, J. S. P. (2024). The Acoustic Index User's Guide: A practical manual for defining, generating and understanding current and future acoustic indices. Methods in Ecology and Evolution. Advance online publication. https://doi.org/10.1111/2041-210x.14357

Vancouver

Bradfer‐Lawrence T, Duthie B, Abrahams C, Adam M, Barnett RJ, Beeston A et al. The Acoustic Index User's Guide: A practical manual for defining, generating and understanding current and future acoustic indices. Methods in Ecology and Evolution. 2024 May 28. Epub 2024 May 28. doi: 10.1111/2041-210x.14357

Author

Bradfer‐Lawrence, Tom ; Duthie, Brad ; Abrahams, Carlos et al. / The Acoustic Index User's Guide : A practical manual for defining, generating and understanding current and future acoustic indices. In: Methods in Ecology and Evolution. 2024.

Bibtex

@article{e5242b8e73024552997c14d7dfd4cd83,
title = "The Acoustic Index User's Guide: A practical manual for defining, generating and understanding current and future acoustic indices",
abstract = "Ecoacoustics, the study of environmental sound, is a rapidly growing discipline offering ecological insights at scales ranging from individual organisms to whole ecosystems. Substantial methodological developments over the last 15 years have streamlined extraction of ecological information from audio recordings. One widely used set of methods are acoustic indices, which offer numerical summaries of the spectral, temporal and amplitude patterns in audio recordings. Currently, the specifics of each index's background, methodology and the soundscape patterns they are designed to summarise, are spread across multiple sources. Critically, details of index calculation are sometimes scarce, making it challenging for users to understand how index values are generated. Discrepancies in understanding can lead to misuse of acoustic indices or reporting of spurious results. This hinders ecological inference, replicability and discourages adoption of these tools for conservation and ecosystem monitoring, where they might otherwise provide useful insight. Here we present the Acoustic Index User's Guide—an interactive RShiny web app that defines and deconstructs eight of the most commonly used acoustic indices to facilitate consistent application across the discipline. We break the acoustic indices calculations down into easy‐to‐follow steps to better enable practical application and critical interpretation of acoustic indices. We demonstrate typical soundscape patterns using a suite of 91 example audio recordings: 66 real‐world soundscapes from terrestrial, aquatic and subterranean systems around the world, and 25 synthetic files demonstrating archetypal soundscape patterns. Our interpretation figures signpost specific soundscape patterns likely to be reflected in acoustic indices' values. This RShiny app is a living resource; additional acoustic indices will be added in the future through collaboration with authors of pre‐existing and new indices. The app also serves as a best‐practice template for the information required when publishing new acoustic indices, so that authors can facilitate the widest possible understanding and uptake of their indices. In turn, improved understanding of acoustic indices will aid effective hypothesis generation, application and interpretation in ecological research, ecosystem monitoring and conservation management.",
keywords = "ecoacoustics, bioacoustics, soundscape, autonomous recording unit, passive acoustic monitoring",
author = "Tom Bradfer‐Lawrence and Brad Duthie and Carlos Abrahams and Maty{\'a}{\v s} Adam and Barnett, {Ross J.} and Amy Beeston and Jennifer Darby and Benedict Dell and Nick Gardner and Amandine Gasc and Becky Heath and Nia Howells and Magnus Janson and Maria‐Viktoria Kyoseva and Thomas Luypaert and Metcalf, {Oliver C.} and Nousek‐McGregor, {Anna E.} and Frederica Poznansky and Ross, {Samuel R. P.‐J.} and Sarab Sethi and Siobhan Smyth and Emily Waddell and Froidevaux, {J{\'e}r{\'e}my S. P.}",
year = "2024",
month = may,
day = "28",
doi = "10.1111/2041-210x.14357",
language = "English",
journal = "Methods in Ecology and Evolution",
issn = "2041-210X",
publisher = "John Wiley and Sons Inc.",

}

RIS

TY - JOUR

T1 - The Acoustic Index User's Guide

T2 - A practical manual for defining, generating and understanding current and future acoustic indices

AU - Bradfer‐Lawrence, Tom

AU - Duthie, Brad

AU - Abrahams, Carlos

AU - Adam, Matyáš

AU - Barnett, Ross J.

AU - Beeston, Amy

AU - Darby, Jennifer

AU - Dell, Benedict

AU - Gardner, Nick

AU - Gasc, Amandine

AU - Heath, Becky

AU - Howells, Nia

AU - Janson, Magnus

AU - Kyoseva, Maria‐Viktoria

AU - Luypaert, Thomas

AU - Metcalf, Oliver C.

AU - Nousek‐McGregor, Anna E.

AU - Poznansky, Frederica

AU - Ross, Samuel R. P.‐J.

AU - Sethi, Sarab

AU - Smyth, Siobhan

AU - Waddell, Emily

AU - Froidevaux, Jérémy S. P.

PY - 2024/5/28

Y1 - 2024/5/28

N2 - Ecoacoustics, the study of environmental sound, is a rapidly growing discipline offering ecological insights at scales ranging from individual organisms to whole ecosystems. Substantial methodological developments over the last 15 years have streamlined extraction of ecological information from audio recordings. One widely used set of methods are acoustic indices, which offer numerical summaries of the spectral, temporal and amplitude patterns in audio recordings. Currently, the specifics of each index's background, methodology and the soundscape patterns they are designed to summarise, are spread across multiple sources. Critically, details of index calculation are sometimes scarce, making it challenging for users to understand how index values are generated. Discrepancies in understanding can lead to misuse of acoustic indices or reporting of spurious results. This hinders ecological inference, replicability and discourages adoption of these tools for conservation and ecosystem monitoring, where they might otherwise provide useful insight. Here we present the Acoustic Index User's Guide—an interactive RShiny web app that defines and deconstructs eight of the most commonly used acoustic indices to facilitate consistent application across the discipline. We break the acoustic indices calculations down into easy‐to‐follow steps to better enable practical application and critical interpretation of acoustic indices. We demonstrate typical soundscape patterns using a suite of 91 example audio recordings: 66 real‐world soundscapes from terrestrial, aquatic and subterranean systems around the world, and 25 synthetic files demonstrating archetypal soundscape patterns. Our interpretation figures signpost specific soundscape patterns likely to be reflected in acoustic indices' values. This RShiny app is a living resource; additional acoustic indices will be added in the future through collaboration with authors of pre‐existing and new indices. The app also serves as a best‐practice template for the information required when publishing new acoustic indices, so that authors can facilitate the widest possible understanding and uptake of their indices. In turn, improved understanding of acoustic indices will aid effective hypothesis generation, application and interpretation in ecological research, ecosystem monitoring and conservation management.

AB - Ecoacoustics, the study of environmental sound, is a rapidly growing discipline offering ecological insights at scales ranging from individual organisms to whole ecosystems. Substantial methodological developments over the last 15 years have streamlined extraction of ecological information from audio recordings. One widely used set of methods are acoustic indices, which offer numerical summaries of the spectral, temporal and amplitude patterns in audio recordings. Currently, the specifics of each index's background, methodology and the soundscape patterns they are designed to summarise, are spread across multiple sources. Critically, details of index calculation are sometimes scarce, making it challenging for users to understand how index values are generated. Discrepancies in understanding can lead to misuse of acoustic indices or reporting of spurious results. This hinders ecological inference, replicability and discourages adoption of these tools for conservation and ecosystem monitoring, where they might otherwise provide useful insight. Here we present the Acoustic Index User's Guide—an interactive RShiny web app that defines and deconstructs eight of the most commonly used acoustic indices to facilitate consistent application across the discipline. We break the acoustic indices calculations down into easy‐to‐follow steps to better enable practical application and critical interpretation of acoustic indices. We demonstrate typical soundscape patterns using a suite of 91 example audio recordings: 66 real‐world soundscapes from terrestrial, aquatic and subterranean systems around the world, and 25 synthetic files demonstrating archetypal soundscape patterns. Our interpretation figures signpost specific soundscape patterns likely to be reflected in acoustic indices' values. This RShiny app is a living resource; additional acoustic indices will be added in the future through collaboration with authors of pre‐existing and new indices. The app also serves as a best‐practice template for the information required when publishing new acoustic indices, so that authors can facilitate the widest possible understanding and uptake of their indices. In turn, improved understanding of acoustic indices will aid effective hypothesis generation, application and interpretation in ecological research, ecosystem monitoring and conservation management.

KW - ecoacoustics

KW - bioacoustics

KW - soundscape

KW - autonomous recording unit

KW - passive acoustic monitoring

U2 - 10.1111/2041-210x.14357

DO - 10.1111/2041-210x.14357

M3 - Journal article

JO - Methods in Ecology and Evolution

JF - Methods in Ecology and Evolution

SN - 2041-210X

ER -