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Additional file 3 of Gene co-expression network analysis identifies hub genes associated with different tolerance under calcium deficiency in two peanut cultivars

Dataset

  • Kang Tang (Creator)
  • Lin Li (Creator)
  • Bowen Zhang (Creator)
  • Wei ZhangHonghe University, Shandong Tumor Hospital, Dian Diagnostics (China), Xuzhou Medical College, School of Electronic Science and Engineering, University of Electronic Science and Technology of China (UESTC), Chengdu, China, Arthritis Research Canada Vancouver British Columbia Canada; Department of Physical Therapy University of British Columbia Vancouver British Columbia Canada, Central South University, Department of Orthopedics, Renmin Hospital, Wuhan University, Wuhan 430060, People's Republic of China., Univ Hawaii Manoa, University of Hawaii Manoa, University of Hawaii System, Hawaii Inst Geophys & Planetol, Second Affiliated Hospital of Zhejiang University, National Clinical Research Center for Digestive Diseases, Zhejiang Univ, Zhejiang University, Inst Informat & Commun Engn, Shandong University, Qingdao, Shandong 266237, China, Xinjiang Medical University, Center for Brain Science, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China., College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China., First Affiliated Hospital of Jinan University, Capital Med Univ, Capital Medical University, Huazhong Agricultural University, Fudan University Shanghai Cancer Center, Department of Epidemiology, School of Public Health, Air Force Medical University, Xi’an, China; Ministry of Education Key Lab of Hazard Assessment and Control in Special Operational Environment, School of Public Health, Air Force Medical University, Xi’an, China, Hubei Academy of Agricultural Sciences, Xinjiang Agricultural University, Centre for Health Evaluation and Outcome Sciences, Second Affiliated Hospital of Chongqing Medical University, East China Jiaotong University, Tsinghua Univ, Tsinghua University, Dept Phys, Tsinghua Ctr Astrophys, First Affiliated Hospital of Harbin Medical University, Urology Department Peking University People's Hospital Beijing China, Huazhong University of Science and Technology, Shandong Academy of Agricultural Sciences, Shandong University of Finance and Economics, Tianjin Medical University Eye Hospital, Kansas State Univ, Kansas State University, Heilongjiang Provincial Academy of Agricultural Sciences, Beijing Academy of Agricultural and Forestry Sciences, Shandong Provincial Hospital, University of Electronic Science and Technology of China, Chengdu, China, Nanjing Medical University, Second Affiliated Hospital of Soochow University, First Affiliated Hospital of Wannan Medical College, Northwestern Univ, Northwestern University, First Affiliated Hospital of Zhengzhou University, Guangdong Provincial People's Hospital, Shanghai Cancer Institute, Guangdong Medical College, Affiliated Hospital of Xuzhou Medical College, Second Military Medical University, ShenZhen People’s Hospital, First Affiliated Hospital of Chongqing Medical University, Peking University Shenzhen Hospital, Bioprocessing Technology Institute, Fudan Univ, Fudan University, Sch Informat Sci & Technol, Tianjin Key Laboratory of Molecular Optoelectronic Sciences Collaborative Innovation Center of Chemical Science and Engineering Tianjin University Tianjin 300072 China, Bruyère Research Institute, College of Computer Science and Software Engineering, Shenzhen University, Shenzhen 518060, China., Chinese Academy of Agricultural Sciences, The First Affiliated Hospital, Dalian Medical University, Dalian, China, Anhui Academy of Agricultural Sciences, Oregon State Univ, Oregon University System, Oregon State University, Forest Biodivers Res Network, Forest Ecosyst & Soc, Xiamen Univ, Xiamen University, Coll Chem & Chem Engn, Dept Chem & Biochem Engn, Jinan Univ, Jinan University, Coll Pharm, Guangdong Prov Key Lab Pharmacodynam Constituents, Arthritis Research Canada Vancouver British Columbia Canada; Department of Rehabilitation Medicine, West China Hospital Sichuan University Chengdu Sichuan China; Rehabilitation Medicine Key Laboratory of Sichuan Province, West China Hospital Sichuan University Chengdu Sichuan China, First Affiliated Hospital of GuangXi Medical University, Univ Chinese Acad Sci, Chinese Academy of Sciences, University of Chinese Academy of Sciences, CAS, Hebei North University, Southeast Univ, Southeast University - China, Sch Transportat, Jiangsu Province Hospital, Shanghai Jiao Tong Univ, Shanghai Jiao Tong University, Sch Mech Engn, Beihang University, CAS - Northwest Institute of Eco-Environment and Resources, Northwest University for Nationalities, Minzu University of China, Jiangsu Academy of Agricultural Sciences, Hunan Agricultural University, Chongqing Technology and Business University, Beijing Tian Tan Hospital, Center for Gene Regulation and Expression, School of Life Sciences, University of Dundee , Dow Street, Dundee DD1 5EH, Scotland, U.K., Tongji University, First Affiliated Hospital of Nanchang University, Peking Univ, Peking University, Sch Earth & Space Sci, Wenzhou Medical University, Southern University of Science and Technology, Shanghai Changzheng Hospital, First Affiliated Hospital of Soochow University, State Key Laboratory of Powder Metallurgy, Central South University, Changsha, 410083, China; Department of Orthopedics, The Second Xiangya Hospital, Central South University, Changsha, 410011, China, Southern Medical University, Geography & Environment Loughborough University Loughborough UK; Department of Ecology and Environmental Science Umeå University Umeå Sweden, Qingdao Institute of Bioenergy and Bioprocess Technology, Henan Provincial People's Hospital, Nanjing Tech University, Yangtze University, Sun Yat Sen Univ, Sun Yat Sen University, Sch Life Sci, Affiliated Hospital of Zunyi Medical College, Hainan University, School of Cyber Science and Engineering, Wuhan University, Wuhan 430072 China, Suzhou Research Institute of Wuhan University, Suzhou 215123 China, Xi'an Medical University, Third Hospital of Hebei Medical University, Guangzhou & Chinese Academy of Sciences, Chongqing University of Posts and Telecommunications, Miami Univ, Miami University, Dept Biol, Shanghai Sixth People's Hospital, Affiliated Hospital of North Sichuan Medical College, Chinese Academy of Medical Sciences & Peking Union Medical College, Hebei Agricultural University, Guangdong Provincial Center for Disease Control and Prevention, Second Hospital of Hebei Medical University, North West Agriculture and Forestry University (Creator)
  • Ningbo Zeng (Creator)
  • Hao ZhangMcGill Univ, McGill University, McGill Sch Environm, The First Affiliated Hospital, Dalian Medical University, Dalian, China, Zhongnan Hospital of Wuhan University, South China University of Technology, Jiangnan University, Henan Normal University, China agricultural University, Northwestern Polytechnical University Xian, Nanjing Medical University, Shanghai Stomatological Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Jilin University, Univ Arizona, University of Arizona, Nanchang University, Hunan Agricultural University, Hubei Academy of Agricultural Sciences, Ocean University of China, Department of Cardiology, State Key Laboratory of Cardiovascular Disease, Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College , Beijing , China; Graduate School of Peking Union Medical College, Chinese Academy of Medical Sciences and Peking Union Medical College , Beijing , China, Shanghai Children's Medical Center, Yunnan Academy of Agricultural Sciences, Guangdong University of Petrochemical Technology, Huazhong University of Science and Technology, Inner Mongolia Academy of Agricultural & Animal Husbandry Sciences, Fudan Univ, Fudan University, Sch Informat Sci & Technol, Chongqing Medical University, Center for Brain Science, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China., Changhai Hospital, Urology Department The Affiliated Qingdao Central Hospital of Qingdao University, The Second Affiliated Hospital of Medical College of Qingdao University Qingdao Shandong China, Cornell Univ, Cornell University, Kavli Inst Cornell, Harvard Univ, Harvard University, Dept Phys, Jiangsu Province Hospital, Wenzhou Medical University, Zhejiang Univ, Zhejiang University, Inst Informat & Commun Engn, Nanyang Technol Univ, Nanyang Technological University, Nanyang Technological University & National Institute of Education (NIE) Singapore, Sch Mat Sci & Engn, Second Affiliated Hospital of Harbin Medical University, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China., Jinan Univ, Jinan University, Coll Pharm, Guangdong Prov Key Lab Pharmacodynam Constituents, Heilongjiang Provincial Hospital, Guangdong Pharmaceutical University, Dalian University of Technology, Ruian People's Hospital, Beijing Anzhen Hospital, Arthritis Research Canada Vancouver British Columbia Canada; Department of Rehabilitation Medicine, West China Hospital Sichuan University Chengdu Sichuan China; Rehabilitation Medicine Key Laboratory of Sichuan Province, West China Hospital Sichuan University Chengdu Sichuan China, Univ Chinese Acad Sci, Chinese Academy of Sciences, University of Chinese Academy of Sciences, CAS, Univ Victoria, University of Victoria, Dept Phys & Astron, Second Affiliated Hospital of Nanjing Medical University, Shanghai Jiao Tong Univ, Shanghai Jiao Tong University, Sch Mech Engn, First Affiliated Hospital of Harbin Medical University, Guangzhou & Chinese Academy of Sciences, Shandong University, Qingdao, Shandong 266237, China (Creator)
  • Dengwang Liu (Creator)
  • Zinan Luo (Creator)

Description

Additional file 3: Table S1. Soil background information. Table S2. RNA-Seq data summary for "XH2008" and "Lanshan" under different calcium treatments. Table S3. Primer sequences of six pairs of genes to be validated using qRT-PCR. Table S4. The module-trait correlation analysis showing pearson correlation value and p-value. Table S5. The KEGG pathways enriched for 61 differentially expressed genes (DEGs) in "XH2008". Table S6. The KEGG pathways enriched for 58 differentially expressed genes (DEGs) in "Lanshan". Table S7. The topological results and annotationinformation for hub-gene sets in the blue module of "XH2008" cultivar. Table S8. The topological results and annotation information for hub-gene sets in the green module of "Lanshan" cultivar. Table S9. The gene expression modes for the genes annotated to secondary metabolites.
Date made available2023
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