This data set includes longitudinal abundance of dung beetles at dung-baited pitfall traps, recorded in 2010, 2016 and 2017 (around six years before, six months after and 18 months after the 2015-16 El Niño event, respectively) in the Brazilian Amazon region. Dung beetles were collected during the collaborative projects AFIRE (Assessing ENSO-induced Fire Impacts in tropical Rainforest Ecosystems) and ECOFOR (Biodiversity and Ecosystem Functioning in degraded and recovering Amazonian and Atlantic Forests), which are part of the NERC Human-Modified Tropical Forest (HTMF) programme.