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Dr Barbara Shih

Lecturer in Bioinformatics

  1. 2025
  2. Published

    Transcriptomic characterisation of acute myeloid leukemia cell lines bearing the same t(9;11) driver mutation reveals different molecular signatures

    Georges, E., Ho, W., Iturritza, M. U., Eory, L., Malysz, K., Sobhiafshar, U., Archibald, A. L., Macqueen, D. J., Shih, B., Garrick, D. & Vernimmen, D., 25/03/2025, In: BMC Genomics. 26, 1, 300.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  3. 2024
  4. Published

    Evergene: an interactive webtool for large-scale gene-centric analysis of primary tumours

    Kennedy, A., Richardson, E., Higham, J., Kotsantis, P., Mort, R. & Shih, B. B.-J., 28/06/2024, In: Bioinformatics advances. 4, 1, vbae092.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  5. Published

    Sequencing and Analysis of Lumpy Skin Disease Virus Whole Genomes Reveals a New Viral Subgroup in West and Central Africa

    Haga, I. R., Shih, B. B., Tore, G., Polo, N., Ribeca, P., Gombo-Ochir, D., Shura, G., Tserenchimed, T., Enkhbold, B., Purevtseren, D., Ulziibat, G., Damdinjav, B., Yimer, L., Bari, F. D., Gizaw, D., Adedeji, A. J., Atai, R. B., Adole, J. A., Dogonyaro, B. B. & Kumarawadu, P. L. & 8 others, Batten, C., Corla, A., Freimanis, G. L., Tennakoon, C., Law, A., Lycett, S., Downing, T. & Beard, P. M., 3/04/2024, In: Viruses. 16, 4, 557.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  6. Published

    West Nile virus spread in Europe: Phylogeographic pattern analysis and key drivers

    Lu, L., Zhang, F., Munnink, B. B. O., Munger, E., Sikkema, R. S., Pappa, S., Tsioka, K., Sinigaglia, A., Dal Molin, E., Shih, B. B., Günther, A., Pohlmann, A., Ziegler, U., Beer, M., Taylor, R. A., Bartumeus, F., Woolhouse, M., Aarestrup, F. M., Barzon, L. & Papa, A. & 2 others, Lycett, S. & Koopmans, M. P. G., 25/01/2024, In: PLoS Pathogens. 20, 1, p. e1011880 e1011880.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  7. 2023
  8. Published

    Delay in loop ileostomy reversal surgery does not impact upon post-operative clinical outcomes. Complications are associated with an increased loss of microflora in the defunctioned intestine

    Beamish, E. L., Johnson, J., Shih, B., Killick, R., Dondelinger, F., McGoran, C., Brewster-Craig, C., Davies, A., Bhowmick, A. & Rigby, R. J., 31/12/2023, In: Gut Microbes. 15, 1, 2199659.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  9. Published

    Development and function of chicken XCR1 + conventional dendritic cells

    Wu, Z., Shih, B., Macdonald, J., Meunier, D., Hogan, K., Chintoan-Uta, C., Gilhooley, H., Hu, T., Beltran, M., Henderson, N. C., Sang, H. M., Stevens, M. P., McGrew, M. J. & Balic, A., 25/10/2023, In: Frontiers in Immunology. 14, 1273661.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  10. Published

    Unraveling the epidemiology of Mycobacterium bovis using whole-genome sequencing combined with environmental and demographic data

    Rossi, G., Shih, B. B. J., Egbe, N. F., Motta, P., Duchatel, F., Kelly, R. F., Ndip, L., Sander, M., Tanya, V. N., Lycett, S. J., Bronsvoort, B. M. & Muwonge, A., 17/05/2023, In: Frontiers in Veterinary Science. 10, 1086001.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  11. Published

    Defining the pig microglial transcriptome reveals its core signature, regional heterogeneity, and similarity with human and rodent microglia

    Shih, B. B., Brown, S. M., Barrington, J., Lefevre, L., Mabbott, N. A., Priller, J., Thompson, G., Lawrence, A. B. & McColl, B. W., 28/02/2023, In: Glia. 71, 2, p. 334-349 16 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  12. Published

    The developmental basis of fingerprint pattern formation and variation.

    Glover, J. D., Sudderick, Z., Shih, B., Batho-Samblas, C., Charlton, L., Krause, A., Anderson, C., Riddell, J., Balic, A., Li, J., Klika, V., Woolley, T., Gaffney, E., Corsinotti, A., Anderson, R., Johnston, L., Brown, S., Wang, S., Chen, Y. & Crichton, M. & 1 others, Headon, D., 9/02/2023, In: Cell. p. 940-956

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

  13. 2022
  14. Published

    A novel strain of lumpy skin disease virus causes clinical disease in cattle in Hong Kong

    Flannery, J., Shih, B., Haga, I. R., Ashby, M., Corla, A., King, S., Freimanis, G., Polo, N., Tse, A.-N., Brackman, C. J., Chan, J., Pun, P., Ferguson, A. D., Law, A., Lycett, S., Batten, C. & Beard, P. M., 31/07/2022, In: Transboundary and Emerging Diseases. 69, 4, p. e336-e343 8 p.

    Research output: Contribution to Journal/MagazineJournal articlepeer-review

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