Transcriptomic characterisation of acute myeloid leukemia cell lines bearing the same t(9;11) driver mutation reveals different molecular signatures

Georges, E., Ho, W., Iturritza, M. U., Eory, L., Malysz, K., Sobhiafshar, U., Archibald, A. L., Macqueen, D. J., Shih, B., Garrick, D. & Vernimmen, D., 25/03/2025, In: BMC Genomics. 26, 1, 300.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Evergene: an interactive webtool for large-scale gene-centric analysis of primary tumours

Kennedy, A., Richardson, E., Higham, J., Kotsantis, P., Mort, R. & Shih, B. B.-J., 28/06/2024, In: Bioinformatics advances. 4, 1, vbae092.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Sequencing and Analysis of Lumpy Skin Disease Virus Whole Genomes Reveals a New Viral Subgroup in West and Central Africa

Haga, I. R., Shih, B. B., Tore, G., Polo, N., Ribeca, P., Gombo-Ochir, D., Shura, G., Tserenchimed, T., Enkhbold, B., Purevtseren, D., Ulziibat, G., Damdinjav, B., Yimer, L., Bari, F. D., Gizaw, D., Adedeji, A. J., Atai, R. B., Adole, J. A., Dogonyaro, B. B. & Kumarawadu, P. L. & 8 others, Batten, C., Corla, A., Freimanis, G. L., Tennakoon, C., Law, A., Lycett, S., Downing, T. & Beard, P. M., 3/04/2024, In: Viruses. 16, 4, 557.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

West Nile virus spread in Europe: Phylogeographic pattern analysis and key drivers

Lu, L., Zhang, F., Munnink, B. B. O., Munger, E., Sikkema, R. S., Pappa, S., Tsioka, K., Sinigaglia, A., Dal Molin, E., Shih, B. B., Günther, A., Pohlmann, A., Ziegler, U., Beer, M., Taylor, R. A., Bartumeus, F., Woolhouse, M., Aarestrup, F. M., Barzon, L. & Papa, A. & 2 others, Lycett, S. & Koopmans, M. P. G., 25/01/2024, In: PLoS Pathogens. 20, 1, p. e1011880 e1011880.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Delay in loop ileostomy reversal surgery does not impact upon post-operative clinical outcomes. Complications are associated with an increased loss of microflora in the defunctioned intestine

Beamish, E. L., Johnson, J., Shih, B., Killick, R., Dondelinger, F., McGoran, C., Brewster-Craig, C., Davies, A., Bhowmick, A. & Rigby, R. J., 31/12/2023, In: Gut Microbes. 15, 1, 2199659.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Development and function of chicken XCR1 + conventional dendritic cells

Wu, Z., Shih, B., Macdonald, J., Meunier, D., Hogan, K., Chintoan-Uta, C., Gilhooley, H., Hu, T., Beltran, M., Henderson, N. C., Sang, H. M., Stevens, M. P., McGrew, M. J. & Balic, A., 25/10/2023, In: Frontiers in Immunology. 14, 1273661.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Unraveling the epidemiology of Mycobacterium bovis using whole-genome sequencing combined with environmental and demographic data

Rossi, G., Shih, B. B. J., Egbe, N. F., Motta, P., Duchatel, F., Kelly, R. F., Ndip, L., Sander, M., Tanya, V. N., Lycett, S. J., Bronsvoort, B. M. & Muwonge, A., 17/05/2023, In: Frontiers in Veterinary Science. 10, 1086001.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Defining the pig microglial transcriptome reveals its core signature, regional heterogeneity, and similarity with human and rodent microglia

Shih, B. B., Brown, S. M., Barrington, J., Lefevre, L., Mabbott, N. A., Priller, J., Thompson, G., Lawrence, A. B. & McColl, B. W., 28/02/2023, In: Glia. 71, 2, p. 334-349 16 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

The developmental basis of fingerprint pattern formation and variation.

Glover, J. D., Sudderick, Z., Shih, B., Batho-Samblas, C., Charlton, L., Krause, A., Anderson, C., Riddell, J., Balic, A., Li, J., Klika, V., Woolley, T., Gaffney, E., Corsinotti, A., Anderson, R., Johnston, L., Brown, S., Wang, S., Chen, Y. & Crichton, M. & 1 others, Headon, D., 9/02/2023, In: Cell. p. 940-956

Research output: Contribution to Journal/Magazine › Journal article › peer-review

A novel strain of lumpy skin disease virus causes clinical disease in cattle in Hong Kong

Flannery, J., Shih, B., Haga, I. R., Ashby, M., Corla, A., King, S., Freimanis, G., Polo, N., Tse, A.-N., Brackman, C. J., Chan, J., Pun, P., Ferguson, A. D., Law, A., Lycett, S., Batten, C. & Beard, P. M., 31/07/2022, In: Transboundary and Emerging Diseases. 69, 4, p. e336-e343 8 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Graphia: A platform for the graph-based visualisation and analysis of high dimensional data

Freeman, T. C., Horsewell, S., Patir, A., Harling-Lee, J., Regan, T., Shih, B. B., Prendergast, J., Hume, D. A. & Angus, T., 25/07/2022, In: PLoS Computational Biology. 18, 7, e1010310.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Stem cell-derived porcine macrophages as a new platform for studying host-pathogen interactions

Meek, S., Watson, T., Eory, L., McFarlane, G., Wynne, F. J., McCleary, S., Dunn, L. E. M., Charlton, E. M., Craig, C., Shih, B., Regan, T., Taylor, R., Sutherland, L., Gossner, A., Chintoan-Uta, C., Fletcher, S., Beard, P. M., Hassan, M. A., Grey, F. & Hope, J. C. & 16 others, Stevens, M. P., Nowak-Imialek, M., Niemann, H., Ross, P. J., Tait-Burkard, C., Brown, S. M., Lefevre, L., Thomson, G., McColl, B. W., Lawrence, A. B., Archibald, A. L., Steinbach, F., Crooke, H. R., Gao, X., Liu, P. & Burdon, T., 14/01/2022, In: BMC Biology. 20, 1, 14.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Mapping the human genetic architecture of COVID-19

COVID-19 Host Genetics Initiative & Shih, B., 16/12/2021, In: Nature. 600, p. 472-477 6 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Aging-Related Impairments to M Cells in Peyer’s Patches Coincide With Disturbances to Paneth Cells

Donaldson, D. S., Shih, B. B. & Mabbott, N. A., 6/12/2021, In: Frontiers in Immunology. 12, 761949.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Genetic mechanisms of critical illness in COVID-19

Pairo-Castineira, E., Clohisey, S., Klaric, L., Bretherick, A. D., Rawlik, K., Pasko, D., Walker, S., Parkinson, N., Fourman, M. H., Russell, C. D., Furniss, J., Richmond, A., Gountouna, E., Wrobel, N., Harrison, D., Wang, B., Wu, Y., Meynert, A., Griffiths, F. & Oosthuyzen, W. & 52 others, Kousathanas, A., Moutsianas, L., Yang, Z., Zhai, R., Zheng, C., Grimes, G., Beale, R., Millar, J., Shih, B., Keating, S., Zechner, M., Haley, C., Porteous, D. J., Hayward , C., Yang, J., Knight, J., Summers, C., Shankar-Hari, M., Klenerman, P., Turtle, L., Ho, A., Moore, S. C., Hinds, C., Horby, P., Nichol, A., Maslove, D., Ling, L., McAuley, D., Montgomery, H., Walsh, T., Pereira, A. C., Renieri, A., GenOMICC Investigators, ISARIC4C Investigators, COVID-19 Human Genetics Initiative, 23andMe Investigators, BRACOVID Investigators, Gen-COVID Investigators, Shen, X., Ponting, C. P., Fawkes, A., Tenesa, A., Caulfield, M., Scott, R., Rowan, K., Murphy, L., Openshaw, P. J. M., Semple, M. G., Law, A., Vitart, V., Wilson, J. F. & Baillie, J. K., 4/03/2021, In: Nature. 591, 7848, p. 92-98 7 p.

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Vitamin D₃replacement enhances antigen-specific immunity in older adults

Chambers, E. S., Vukmanovic-Stejic, M., Turner, C. T., Shih, B. B., Trahair, H., Pollara, G., Tsaliki, E., Rustin, M., Freeman, T. C., Mabbott, N. A., Noursadeghi, M., Martineau, A. R. & Akbar, A. N., 31/01/2021, In: Immunotherapy Advances. 1, 1, ltaa008.

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Recruitment of inflammatory monocytes by senescent fibroblasts inhibits antigen-specific tissue immunity during human aging

Chambers, E. S., Vukmanovic-Stejic, M., Shih, B. B., Trahair, H., Subramanian, P., Devine, O. P., Glanville, J., Gilroy, D., Rustin, M. H. A., Freeman, T. C., Mabbott, N. A. & Akbar, A. N., 14/01/2021, In: Nature Aging. 1, 1, p. 101-113 13 p.

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Computational Analysis of SARS-CoV-2 and SARS-Like Coronavirus Diversity in Human, Bat and Pangolin Populations

Dimonaco, N. J., Salavati, M. & Shih, B., 30/12/2020, In: Viruses. 13, 1, 49.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Madin-Darby bovine kidney (MDBK) cells are a suitable cell line for the propagation and study of the bovine poxvirus lumpy skin disease virus

Fay, P. C., Cook, C. G., Wijesiriwardana, N., Tore, G., Comtet, L., Carpentier, A., Shih, B., Freimanis, G., Haga, I. R. & Beard, P. M., 30/11/2020, In: Journal of Virological Methods. 285, 113943.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Influence of skin melanisation and ultraviolet radiation on biomarkers of systemic oxidative stress

Shih, B. B., Farrar, M. D., Vail, A., Allan, D., Chao, M.-R., Hu, C.-W., Jones, G. D. D., Cooke, M. S. & Rhodes, L. E., 20/11/2020, In: Free Radical Biology and Medicine. 160, p. 40-46 7 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Photoprotection conferred by low level summer sunlight exposures against pro-inflammatory UVR insult

Felton, S. J., Shih, B. B., Watson, R. E. B., Kift, R., Webb, A. R. & Rhodes, L. E., 1/06/2020, In: Photochemical and Photobiological Sciences. 19, 6, p. 810-818 9 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Identification of Complex Rumen Microbiome Interaction Within Diverse Functional Niches as Mechanisms Affecting the Variation of Methane Emissions in Bovine

Martínez-Álvaro, M., Auffret, M. D., Stewart, R. D., Dewhurst, R. J., Duthie, C.-A., Rooke, J. A., Wallace, R. J., Shih, B., Freeman, T. C., Watson, M. & Roehe, R., 17/04/2020, In: Frontiers in Microbiology. 11, 659.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Visualization and analysis of RNA-Seq assembly graphs

Nazarie, F. W., Shih, B., Angus, T., Barnett, M. W., Chen, S.-H., Summers, K. M., Klein, K., Faulkner, G. J., Saini, H. K., Watson, M., Dongen, S. V., Enright, A. J. & Freeman, T. C., 22/08/2019, In: Nucleic Acids Research. 47, 14, p. 7262-7275 14 p.

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A core transcriptional signature of human microglia: Derivation and utility in describing region-dependent alterations associated with Alzheimer's disease

Patir, A., Shih, B., McColl, B. W. & Freeman, T. C., 13/02/2019, In: Glia. 67, 7, p. 1240-1253 14 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Immune cell gene signatures for profiling the microenvironment of solid tumors

Nirmal, A. J., Regan, T., Shih, B. B., Hume, D. A., Sims, A. H. & Freeman, T. C., 2/11/2018, In: Cancer Immunology Research. 6, 11, p. 1388-1400 13 p.

Research output: Contribution to Journal/Magazine › Journal article › peer-review