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Harvard
Blomquist, PB
, Bridgen, J, Bray, N, O’Connell, AM, West, D, Groves, N, Gallagher, E, Utsi, L, Jarvis, CI, Hardstaff, JL, Byers, C, Metelmann, S, Simons, D, Zaidi, A, Twohig, KA, Savagar, B, Løchen, A, Wrenn, K, Saavedra-Campos, M, Abedin, Z, Florence, I, Cleary, P, Elson, R, Vivancos, R & Lake, IR 2022, '
Enhancing epidemiological surveillance of the emergence of the SARS-CoV-2 Omicron variant using spike gene target failure data, England, 15 November to 31 December 2021',
Eurosurveillance, vol. 27, no. 11, 2200143.
https://doi.org/10.2807/1560-7917.ES.2022.27.11.2200143APA
Blomquist, P. B.
, Bridgen, J., Bray, N., O’Connell, A. M., West, D., Groves, N., Gallagher, E., Utsi, L., Jarvis, C. I., Hardstaff, J. L., Byers, C., Metelmann, S., Simons, D., Zaidi, A., Twohig, K. A., Savagar, B., Løchen, A., Wrenn, K., Saavedra-Campos, M., ... Lake, I. R. (2022).
Enhancing epidemiological surveillance of the emergence of the SARS-CoV-2 Omicron variant using spike gene target failure data, England, 15 November to 31 December 2021.
Eurosurveillance,
27(11), Article 2200143.
https://doi.org/10.2807/1560-7917.ES.2022.27.11.2200143Vancouver
Author
Bibtex
@article{477eb2962a8a489bbbc18289540ac0ce,
title = "Enhancing epidemiological surveillance of the emergence of the SARS-CoV-2 Omicron variant using spike gene target failure data, England, 15 November to 31 December 2021",
abstract = "When SARS-CoV-2 Omicron emerged in 2021, S gene target failure enabled differentiation between Omicron and the dominant Delta variant. In England, where S gene target surveillance (SGTS) was already established, this led to rapid identification (within ca 3 days of sample collection) of possible Omicron cases, alongside real-time surveillance and modelling of Omicron growth. SGTS was key to public health action (including case identification and incident management), and we share applied insights on how and when to use SGTS.",
author = "Blomquist, {Paula B} and Jessica Bridgen and Neil Bray and O{\textquoteright}Connell, {Anne Marie} and Daniel West and Natalie Groves and Eileen Gallagher and Lara Utsi and Jarvis, {Christopher I} and Hardstaff, {Jo L} and Chloe Byers and Soeren Metelmann and David Simons and Asad Zaidi and Twohig, {Katherine A} and Bethan Savagar and Alessandra L{\o}chen and Katie Wrenn and Mar{\'i}a Saavedra-Campos and Zahidul Abedin and Isaac Florence and Paul Cleary and Richard Elson and Roberto Vivancos and Lake, {Iain R}",
year = "2022",
month = mar,
day = "17",
doi = "10.2807/1560-7917.ES.2022.27.11.2200143",
language = "English",
volume = "27",
journal = "Eurosurveillance",
issn = "1025-496X",
publisher = "Centre Europeen pour la Surveillance Epidemiologique du SIDA",
number = "11",
}
RIS
TY - JOUR
T1 - Enhancing epidemiological surveillance of the emergence of the SARS-CoV-2 Omicron variant using spike gene target failure data, England, 15 November to 31 December 2021
AU - Blomquist, Paula B
AU - Bridgen, Jessica
AU - Bray, Neil
AU - O’Connell, Anne Marie
AU - West, Daniel
AU - Groves, Natalie
AU - Gallagher, Eileen
AU - Utsi, Lara
AU - Jarvis, Christopher I
AU - Hardstaff, Jo L
AU - Byers, Chloe
AU - Metelmann, Soeren
AU - Simons, David
AU - Zaidi, Asad
AU - Twohig, Katherine A
AU - Savagar, Bethan
AU - Løchen, Alessandra
AU - Wrenn, Katie
AU - Saavedra-Campos, María
AU - Abedin, Zahidul
AU - Florence, Isaac
AU - Cleary, Paul
AU - Elson, Richard
AU - Vivancos, Roberto
AU - Lake, Iain R
PY - 2022/3/17
Y1 - 2022/3/17
N2 - When SARS-CoV-2 Omicron emerged in 2021, S gene target failure enabled differentiation between Omicron and the dominant Delta variant. In England, where S gene target surveillance (SGTS) was already established, this led to rapid identification (within ca 3 days of sample collection) of possible Omicron cases, alongside real-time surveillance and modelling of Omicron growth. SGTS was key to public health action (including case identification and incident management), and we share applied insights on how and when to use SGTS.
AB - When SARS-CoV-2 Omicron emerged in 2021, S gene target failure enabled differentiation between Omicron and the dominant Delta variant. In England, where S gene target surveillance (SGTS) was already established, this led to rapid identification (within ca 3 days of sample collection) of possible Omicron cases, alongside real-time surveillance and modelling of Omicron growth. SGTS was key to public health action (including case identification and incident management), and we share applied insights on how and when to use SGTS.
U2 - 10.2807/1560-7917.ES.2022.27.11.2200143
DO - 10.2807/1560-7917.ES.2022.27.11.2200143
M3 - Journal article
VL - 27
JO - Eurosurveillance
JF - Eurosurveillance
SN - 1025-496X
IS - 11
M1 - 2200143
ER -
