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LGAAP: Leishmaniinae Genome Assembly and Annotation Pipeline

Research output: Contribution to Journal/Magazine › Journal article › peer-review

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LGAAP: Leishmaniinae Genome Assembly and Annotation Pipeline. / Almutairi, Hatim; Urbaniak, Michael D; Bates, Michelle D et al.
In: Microbiology Resource Announcements, Vol. 10, No. 29, e0043921, 22.07.2021.

Research output: Contribution to Journal/Magazine › Journal article › peer-review

Harvard

Almutairi, H, Urbaniak, MD, Bates, MD, Jariyapan, N, Kwakye-Nuako, G, Thomaz-Soccol, V, Al-Salem, WS, Dillon, RJ, Bates, PA & Gatherer, D 2021, 'LGAAP: Leishmaniinae Genome Assembly and Annotation Pipeline', Microbiology Resource Announcements, vol. 10, no. 29, e0043921. https://doi.org/10.1128/MRA.00439-21

APA

Almutairi, H., Urbaniak, M. D., Bates, M. D., Jariyapan, N., Kwakye-Nuako, G., Thomaz-Soccol, V., Al-Salem, W. S., Dillon, R. J., Bates, P. A., & Gatherer, D. (2021). LGAAP: Leishmaniinae Genome Assembly and Annotation Pipeline. Microbiology Resource Announcements, 10(29), Article e0043921. https://doi.org/10.1128/MRA.00439-21

Vancouver

Almutairi H, Urbaniak MD, Bates MD, Jariyapan N, Kwakye-Nuako G, Thomaz-Soccol V et al. LGAAP: Leishmaniinae Genome Assembly and Annotation Pipeline. Microbiology Resource Announcements. 2021 Jul 22;10(29):e0043921. doi: 10.1128/MRA.00439-21

Author

Almutairi, Hatim ; Urbaniak, Michael D ; Bates, Michelle D et al. / LGAAP : Leishmaniinae Genome Assembly and Annotation Pipeline. In: Microbiology Resource Announcements. 2021 ; Vol. 10, No. 29.

Bibtex

@article{bd95427ef9214f78b3e6e7ebfccbbd7e,
title = "LGAAP: Leishmaniinae Genome Assembly and Annotation Pipeline",
abstract = "We present the LGAAP computational pipeline, which was successfully used to assemble six genomes of the parasite subfamily Leishmaniinae to chromosome-scale completeness from a combination of long- and short-read sequencing data. LGAAP is open source, and we suggest that it may easily be ported for assembly of any genome of comparable size (∼35 Mb).",
keywords = "Leishmaniinae, bioinformatics, genome assembly, genome sequencing, Snakemake, parasite, Parasitology, kinetoplastid",
author = "Hatim Almutairi and Urbaniak, {Michael D} and Bates, {Michelle D} and Narissara Jariyapan and Godwin Kwakye-Nuako and Vanete Thomaz-Soccol and Al-Salem, {Waleed S} and Dillon, {Rod J} and Bates, {Paul A} and Derek Gatherer",
year = "2021",
month = jul,
day = "22",
doi = "10.1128/MRA.00439-21",
language = "English",
volume = "10",
journal = "Microbiology Resource Announcements",
issn = "2576-098X",
publisher = "American Society for Microbiology",
number = "29",

}

RIS

TY - JOUR

T1 - LGAAP

T2 - Leishmaniinae Genome Assembly and Annotation Pipeline

AU - Almutairi, Hatim

AU - Urbaniak, Michael D

AU - Bates, Michelle D

AU - Jariyapan, Narissara

AU - Kwakye-Nuako, Godwin

AU - Thomaz-Soccol, Vanete

AU - Al-Salem, Waleed S

AU - Dillon, Rod J

AU - Bates, Paul A

AU - Gatherer, Derek

PY - 2021/7/22

Y1 - 2021/7/22

N2 - We present the LGAAP computational pipeline, which was successfully used to assemble six genomes of the parasite subfamily Leishmaniinae to chromosome-scale completeness from a combination of long- and short-read sequencing data. LGAAP is open source, and we suggest that it may easily be ported for assembly of any genome of comparable size (∼35 Mb).

AB - We present the LGAAP computational pipeline, which was successfully used to assemble six genomes of the parasite subfamily Leishmaniinae to chromosome-scale completeness from a combination of long- and short-read sequencing data. LGAAP is open source, and we suggest that it may easily be ported for assembly of any genome of comparable size (∼35 Mb).

KW - Leishmaniinae

KW - bioinformatics

KW - genome assembly

KW - genome sequencing

KW - Snakemake

KW - parasite

KW - Parasitology

KW - kinetoplastid

U2 - 10.1128/MRA.00439-21

DO - 10.1128/MRA.00439-21

M3 - Journal article

C2 - 34292068

VL - 10

JO - Microbiology Resource Announcements

JF - Microbiology Resource Announcements

SN - 2576-098X

IS - 29

M1 - e0043921

ER -