Final published version
Licence: CC BY: Creative Commons Attribution 4.0 International License
Research output: Contribution to Journal/Magazine › Journal article › peer-review
Research output: Contribution to Journal/Magazine › Journal article › peer-review
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TY - JOUR
T1 - LGAAP
T2 - Leishmaniinae Genome Assembly and Annotation Pipeline
AU - Almutairi, Hatim
AU - Urbaniak, Michael D
AU - Bates, Michelle D
AU - Jariyapan, Narissara
AU - Kwakye-Nuako, Godwin
AU - Thomaz-Soccol, Vanete
AU - Al-Salem, Waleed S
AU - Dillon, Rod J
AU - Bates, Paul A
AU - Gatherer, Derek
PY - 2021/7/22
Y1 - 2021/7/22
N2 - We present the LGAAP computational pipeline, which was successfully used to assemble six genomes of the parasite subfamily Leishmaniinae to chromosome-scale completeness from a combination of long- and short-read sequencing data. LGAAP is open source, and we suggest that it may easily be ported for assembly of any genome of comparable size (∼35 Mb).
AB - We present the LGAAP computational pipeline, which was successfully used to assemble six genomes of the parasite subfamily Leishmaniinae to chromosome-scale completeness from a combination of long- and short-read sequencing data. LGAAP is open source, and we suggest that it may easily be ported for assembly of any genome of comparable size (∼35 Mb).
KW - Leishmaniinae
KW - bioinformatics
KW - genome assembly
KW - genome sequencing
KW - Snakemake
KW - parasite
KW - Parasitology
KW - kinetoplastid
U2 - 10.1128/MRA.00439-21
DO - 10.1128/MRA.00439-21
M3 - Journal article
C2 - 34292068
VL - 10
JO - Microbiology Resource Announcements
JF - Microbiology Resource Announcements
SN - 2576-098X
IS - 29
M1 - e0043921
ER -