We compute symplectic cohomology for Milnor fibres of certain compound Du Val singularities that admit small resolution by using homological mirror symmetry. Our computations suggest a new conjecture that the existence of a small resolution has strong implications for the symplectic cohomology and conversely. We also use our computations to give a contact invariant of the link of the singularities and thereby distinguish many contact structures on connected sums of S^2×S^3.