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Using step selection functions to analyse human mobility using telemetry data in infectious disease epidemiology: a case study of leptospirosis

Research output: Working paperPreprint

E-pub ahead of print
  • Pablo Ruiz Cuenca
  • Fabio Neves Souza
  • Roberta Coutinho do Nascimento
  • Ariane Goncalves da Silva
  • Max T Eyre
  • Juliet O Santana
  • Daiana Santos de Oliveira
  • Emile Victoria Ribeiro de Souza
  • Fabiana Almerinda G Palma
  • Diogo César de Carvalho Santiago
  • Priscyla Dos Santos Ribeiro
  • Jonathan M Read
  • Cleber Cremonese
  • Federico Costa
  • Emanuele Giorgi
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Publication date1/05/2025
PublishermedRxiv
<mark>Original language</mark>English

Publication series

NamemedRxiv : the preprint server for health sciences

Abstract

Human movement plays a critical role in the transmission of infectious diseases, especially those with environmental drivers like leptospirosis-a zoonotic bacterial infection linked to mud and water contact. Using GPS loggers, we collected detailed telemetry data to understand how fine-scale movements can be analysed in the context of an infectious disease. We recruited individuals living in urban slums in Salvador, Brazil to analyse how they interact with environmental risk factors such as domestic rubbish piles, open sewers, and a local stream. We aimed to identify differences in movement patterns inside the study areas by gender, age, and leptospirosis serological status. Step-selection functions, a spatio-temporal model used in animal movement ecology, estimated selection coefficients to represent the likelihood of movement toward specific environmental factors. With 124 participants wearing GPS devices for 24 to 48 hours, recording locations every 35 seconds during active daytime hours, we segmented movements into morning, midday, afternoon, and evening. Our results suggested women moved closer to the central stream and farther from open sewers compared to men, while serologically positive individuals avoided open sewers. This study introduces a novel method for analysing human telemetry data in infectious disease research, providing critical insights for targeted interventions.