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ESS-DIVE reporting format for leaf-level gas exchange data and metadata

Dataset

  • Kim S. Ely (Creator)
  • Alistair Rogers (Creator)
  • Robert Crystal-Ornelas (Creator)
  • Deborah Agarwal (Contributor)
  • Ainsworth Elizabeth (Contributor)
  • Loren Albert (Contributor)
  • Ashehad Ali (Contributor)
  • Jeremiah Anderson (Contributor)
  • Michael J. Aspinwall (Contributor)
  • Chandra Bellasio (Contributor)
  • Carl Bernacchi (Contributor)
  • Steve Bonnage (Contributor)
  • Thomas Buckley (Contributor)
  • James Bunce (Contributor)
  • Angela Burnett (Contributor)
  • Florian A. Busch (Contributor)
  • Amanda P. Cavanagh (Contributor)
  • Lucas A. Cernusak (Contributor)
  • Joan Damerow (Contributor)
  • Kenneth R. Davidson (Contributor)
  • Martin De Kauwe (Contributor)
  • Michael Dietze (Contributor)
  • Tomas Domingues (Contributor)
  • Mirindi Dusenge (Contributor)
  • David Ellsworth (Contributor)
  • John Evans (Contributor)
  • Paul Gauthier (Contributor)
  • Bruno Gimenez (Contributor)
  • Elizabeth Gordon (Contributor)
  • Christopher Gough (Contributor)
  • Aud Halbritter (Contributor)
  • David T Hanson (Contributor)
  • Mary Heskel (Contributor)
  • James Aaron Hogan (Contributor)
  • Jason Hupp (Contributor)
  • Kolby Jardine (Contributor)
  • Jens Kattge (Contributor)
  • Trevor Keenan (Contributor)
  • Johannes Kromdijk (Contributor)
  • Dushan Kumarathunge (Contributor)
  • Julien Lamour (Contributor)
  • Andrew D. B. Leakey (Contributor)
  • David S. LeBauer (Contributor)
  • Qianyu Li (Contributor)
  • Marjorie Lundgren (Contributor)
  • Nate McDowell (Contributor)
  • Katherine Meacham-Hensold (Contributor)
  • Belinda Medlyn (Contributor)
  • David Moore (Contributor)
  • Robinson Negrón-Juárez (Contributor)
  • Ülo Niinemets (Contributor)
  • Colin Osborne (Contributor)
  • Alexandria Pivovaroff (Contributor)
  • Hendrik Porter (Contributor)
  • Sasha Reed (Contributor)
  • Youngryel Ryu (Contributor)
  • Alvaro Sanz-Saez (Contributor)
  • Stephanie Schmiege (Contributor)
  • Shawn Serbin (Contributor)
  • Thomas Sharkey (Contributor)
  • Martijn Slot (Contributor)
  • Nicholas SmithTexas Tech Univ, Texas Tech University, Texas Tech University System, Dept Phys (Contributor)
  • Balasaheb Sonewane (Contributor)
  • Paul South (Contributor)
  • Daisy Souza (Contributor)
  • Joseph Stinziano (Contributor)
  • Ellen Stuart-Haëntjens (Contributor)
  • Samuel Taylor (Contributor)
  • Mauricio Tejera (Contributor)
  • Johan Uddling (Contributor)
  • Vigdis Vandik (Contributor)
  • Charuleka Varadharajan (Contributor)
  • Anthony WalkerComputer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 (Contributor)
  • Berkley Walker (Contributor)
  • Jeffrey Warren (Contributor)
  • Danielle Way (Contributor)
  • Brett Wolfe (Contributor)
  • Jin Wu (Contributor)
  • Stan Wullschleger (Contributor)
  • Chonggang Xu (Contributor)
  • Dedi Yang (Contributor)
  • Zhengbing Yan (Contributor)

Description

Here we present documentation of the ESS-DIVE reporting format for leaf-level gas exchange data and metadata. This reporting format provides guidance to data contributors on how to store data to maximize their discoverability, facilitate their efficient reuse, and add value to individual datasets. For data users, the reporting format will better allow data repositories to optimize data search and extraction, and more readily integrate similar data into harmonized synthesis products. The reporting format specifies data table variable naming and unit conventions, as well as metadata characterizing experimental conditions and protocols. For common data types that were the focus of this initial version of the reporting format, i.e., survey measurements, dark respiration, carbon dioxide and light response curves, and parameters derived from those measurements, we took a further step of defining required additional data that would maximize the potential reuse of those data types. To aid data contributors and the development of data ingest tools by data repositories we provided a translation table comparing the outputs of common gas exchange instruments. The reporting format presented here is intended to form a foundation for future development that will incorporate additional data types and variables as gas exchange systems and measurement approaches advance in the future. The reporting format documentation is maintained and updated on the ESS-DIVE Community Space GitHub. This data package is the first published version of this reporting format, and comprises a zip file of the complete content of https://github.com/ess-dive-community/essdive-leaf-gas-exchange v1.0. The zip contains the reporting format description, guidelines, variable tables and instructions in GitHub markdown language (*.md) and 2 metadata templates as spreadsheets with drop down options (*.xlsx files, also function in GoogleSheets).
Date made available2020
PublisherEnvironmental System Science Data Infrastructure for a Virtual Ecosystem; Environmental Systems Science Data Infrastructure for a Virtual Ecosystem

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