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Nonlinear and Biomedical Physics

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  1. Journal article
  2. Published

    Ionic Coulomb blockade and the determinants of selectivity in the NaChBac bacterial sodium channel

    Fedorenko, O. A., Kaufman, I. K., Gibby, W. A. T., Barabash, M. L., Luchinsky, D. G., Roberts, S. K. & McClintock, P. V. E., 1/09/2020, In: Biochimica et Biophysica Acta (BBA) - Biomembranes. 1862, 9, 9 p., 183301.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  3. Published

    Welding dynamics in an atomistic model of an amorphous polymer blend with polymer-polymer interface

    Luchinsky, D. G., Hafiychuk, H., Hafiychuk, V., Chaki, K., Nitta, H., Ozawa, T., Wheeler, K. R., Prater, T. J. & McClintock, P. V. E., 1/08/2020, In: Journal of Polymer Science Part B: Polymer Physics. 58, 15, p. 2051-2061 11 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  4. Published

    Relationship between cardiorespiratory phase coherence during hypoxia and genetic polymorphism in humans

    Lancaster, G., Debevec, T., Millet, G., Poussel, M., Willis, S., Mramor, M., Goričar, K., Osredkar, D., Dolžan, V. & Stefanovska, A., 1/05/2020, In: The Journal of Physiology. 598, 10, p. 2001-2019 19 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  5. Published

    Race-specific differences in the phase coherence between blood flow and oxygenation: A simultaneous NIRS, white light spectroscopy and LDF study

    Abdulhameed, Y. A., McClintock, P. V. E. & Stefanovska, A., 1/04/2020, In: Journal of Biophotonics. 13, 4, 15 p., 201960131.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  6. Published

    Exact firing rate model reveals the differential effects of chemical versus electrical synapses in spiking networks

    Pietras, B., Devalle, F., Roxin, A., Daffertshofer, A. & Montbrió, E., 24/10/2019, In: Physical Review E. 100, 4, 12 p., 042412.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  7. Published

    On the suitability of laser-Doppler flowmetry for capturing microvascular blood flow dynamics from darkly pigmented skin

    Abdussalam, Y. A., Lancaster, G., McClintock, P. V. E. & Stefanovska, A., 30/07/2019, In: Physiological Measurement. 40, 7, 12 p., 074005.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  8. Published

    Network dynamics of coupled oscillators and phase reduction techniques

    Pietras, B. & Daffertshofer, A., 25/07/2019, In: Physics Reports. 819, p. 1-105 105 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  9. Published

    Exploring the pore charge dependence of K+ and Cl- permeation across a graphene monolayer: a Molecular Dynamics study

    Guardiani, C., Gibby, W. A. T., Barabash, M. L., Luchinsky, D. G. & McClintock, P. V. E., 1/07/2019, In: RSC Advances. 9, 35, p. 20402-20414 13 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  10. Published

    From the potential of the mean force to a quasiparticle’s effective potential in narrow ion channels

    Barabash, M., Gibby, W. A. T., Guardiani, C., Luchinsky, D. & McClintock, P. V. E., 1/06/2019, In: Fluctuation and Noise Letters. 18, 2, 13 p., 1940006.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  11. Published

    Theory and experiments on multi-ion permeation and selectivity in the NaChBac ion channel

    Gibby, W. A. T., Barabash, M., Guardiani, C., Luchinsky, D., Fedorenko, O., Roberts, S. K. & McClintock, P. V. E., 1/06/2019, In: Fluctuation and Noise Letters. 18, 2, 13 p., 1940007.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  12. Published

    Nonautonomous driving induces stability in network of identical oscillators

    Lucas, M., Fanelli, D. & Stefanovska, A., 7/01/2019, In: Physical Review E. 99, 1, p. 012309 8 p., 012309.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  13. Published

    First-order phase transitions in the Kuramoto model with compact bimodal frequency distributions

    Pietras, B., Deschle, N. & Daffertshofer, A., 26/12/2018, In: Physical Review E. 98, 6, 15 p., 062219.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  14. Published

    Dynamics of a large system of spiking neurons with synaptic delay

    Devalle, F., Montbrió, E. & Pazó, D., 22/10/2018, In: Physical Review E. 98, 4, 13 p., 042214.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  15. Published

    Scale-freeness or partial synchronization in neural mass phase oscillator networks: Pick one of two?

    Daffertshofer, A., Ton, R., Pietras, B., Kringelbach, M. L. & Deco, G., 15/10/2018, In: NeuroImage. 180 , Part B, p. 428-411 14 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  16. Published

    Experimental Realization of the Coupling Function Secure Communications Protocol and Analysis of its Noise Robustness

    Nadzinski, G., Dobrevski, M., Anderson, C., McClintock, P. V. E., Stefanovska, A., Stankovski, M. & Stankovski, T., 10/2018, In: IEEE Transactions on Information Forensics and Security. 13, 10, p. 2591-2601 11 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  17. Published

    Surrogate data for hypothesis testing of physical systems

    Lancaster, G., Iatsenko, D., Pidde, A., Ticcinelli, V. & Stefanovska, A., 18/07/2018, In: Physics Reports. 748, p. 1-60 60 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  18. Published

    Desynchronization induced by time-varying network

    Lucas, M., Fanelli, D., Carletti, T. & Petit, J., 10/05/2018, In: EPL. 121, 5, 7 p., 50008.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  19. Published

    Stabilization of dynamics of oscillatory systems by nonautonomous perturbation

    Lucas, M., Newman, J. & Stefanovska, A., 17/04/2018, In: Physical Review E. 97, 4, 13 p., 042209.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  20. Published

    Human subarachnoid space width oscillations in the resting state

    Gruszecki, M., Lancaster, G., Stefanovska, A., Neary, J. P., Dech, R. T., Guminski, W., Frydrychowski, A. F., Kot, J. & Winklewski, P. J., 15/02/2018, In: Scientific Reports. 8, 10 p., 3057.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  21. Published

    Firing rate equations require a spike synchrony mechanism to correctly describe fast oscillations in inhibitory networks

    Devalle, F., Roxin, A. & Montbrió, E., 29/12/2017, In: PLoS Computational Biology. 13, 12, 21 p., 1005881.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  22. Published

    Coupling functions: universal insights into dynamical interaction mechanisms

    Stankovski, T., Pereira, T., McClintock, P. V. E. & Stefanovska, A., 6/11/2017, In: Reviews of Modern Physics. 89, 4, 50 p., 045001.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  23. Published

    Coherence and coupling functions reveal microvascular impairment in treated hypertension

    Ticcinelli, V., Stankovski, T., Iatsenko, D., Bernjak, A., Bradbury, A., Gallagher, A., Clarkson, P. B. M., McClintock, P. V. E. & Stefanovska, A., 13/10/2017, In: Frontiers in Physiology. 8, 20 p., 749.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  24. Published

    Using exclusion rate to unify niche and neutral perspectives on coexistence

    Carmel, Y., Suprunenko, Y., Kunin, W. E., Kent, R., Belmaker, J., Bar-Massada, A. & Cornell, S. J., 10/2017, In: Oikos. 126, 10, p. 1451-1458 8 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  25. Published

    Ionic Coulomb blockade and anomalous mole fraction effect in the NaChBac bacterial ion channel and its charge-varied mutants

    Kaufman, I. K., Fedorenko, O., Luchinsky, D., Gibby, W., Roberts, S. K., McClintock, P. V. E. & Eisenberg, R. S., 11/09/2017, In: EPJ Nonlinear Biomedical Physics. 5, 8 p., 4.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  26. Published

    Vibrational resonance in an inhomogeneous medium with periodic dissipation

    Roy-Layinde, T. O., Laoye, J. A., Popoola, O. O., Vincent, U. E. & McClintock, P. V. E., 8/09/2017, In: Physical Review E. 96, 3, 8 p., 032209.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  27. Published

    Neural Cross-Frequency Coupling Functions

    Stankovski, T., Ticcinelli, V., McClintock, P. V. E. & Stefanovska, A., 15/06/2017, In: Frontiers in Systems Neuroscience. 11, 13 p., 33.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  28. Published

    Kinetic model of selectivity and conductivity of the KcsA filter

    Gibby, W. A. T., Luchinsky, D. G., Kaufman, I. K., Ward, A. & McClintock, P. V. E., 11/04/2017, In: arxiv.org. 4 p., 1704.03267.

    Research output: Contribution to Journal/Magazine › Journal article

  29. Published

    Effect of Local Binding on Stochastic Transport in Ion Channels

    Kaufman, I. K., Gibby, W. A. T., Luchinsky, D. G. & McClintock, P. V. E., 4/04/2017, In: arXiv.

    Research output: Contribution to Journal/Magazine › Journal article

  30. Published

    Ionic Coulomb blockade and anomalous mole fraction effect in NaChBac bacterial ion channels

    Kaufman, I. K., Fedorenko, O. A., Luchinsky, D. G., Gibby, W. A. T., Roberts, S., McClintock, P. V. E. & Eisenberg, R. S., 8/12/2016, In: arXiv.

    Research output: Contribution to Journal/Magazine › Journal article

  31. Published

    Equivalence of coupled networks and networks with multimodal frequency distributions: Conditions for the bimodal and trimodal case

    Pietras, B., Deschle, N. & Daffertshofer, A., 9/11/2016, In: Physical Review E. 94, 5, 11 p., 052211.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  32. Published

    Ott-Antonsen attractiveness for parameter-dependent oscillatory systems

    Pietras, B. & Daffertshofer, A., 10/2016, In: Chaos. 26, 10, 103101.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  33. Published

    Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states

    Lancaster, G., Suprunenko, Y., Jenkins, K. & Stefanovska, A., 3/08/2016, In: Scientific Reports. 6, 15 p., 29584.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  34. Published

    Extraction of instantaneous frequencies from ridges in time-frequency representations of signals

    Iatsenko, D., McClintock, P. V. E. & Stefanovska, A., 08/2016, In: Signal Processing. 125, p. 290–303 14 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  35. Published

    Putative resolution of the EEEE selectivity paradox in L-type Ca2+ and bacterial Na+ biological ion channels

    Kaufman, I. K., Luchinsky, D. G., Gibby, W. A. T., McClintock, P. V. E. & Eisenberg, R. S., 20/05/2016, In: Journal of Statistical Mechanics: Theory and Experiment. 2016, 10 p., 054027 .

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  36. Published

    Statistical theory of selectivity and conductivity in biological channels

    Luchinsky, D. G., Gibby, W. A. T., Kaufman, I., Timucin, D. A. & McClintock, P. V. E., 19/04/2016, In: arxiv.org.

    Research output: Contribution to Journal/Magazine › Journal article

  37. Published

    Alterations in the coupling functions between cortical and cardio-respiratory oscillations due to anæsthesia with propofol and sevoflurane

    Stankovski, T., Petkoski, S., Raeder, J., Smith, A., McClintock, P. V. E. & Stefanovska, A., 4/04/2016, In: Philosophical Transactions of the Royal Society of London A. 374, 2067, 18 p., 20150186.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  38. Published

    Reconstructing time-dependent dynamics

    Clemson, P., Lancaster, G. & Stefanovska, A., 02/2016, In: Proceedings of the IEEE . 104, 2, p. 223-241 19 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  39. Published

    Hyperchaos and bifurcations in a driven Van der Pol–Duffing oscillator circuit

    Vincent, U., Nana-Nbendjo, B. R., Ajayi, A. A., Njah, A. N. & McClintock, P. V. E., 12/2015, In: International Journal of Dynamics and Control. 3, 4, p. 363-370 8 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  40. Published

    The discriminatory value of cardiorespiratory interactions in distinguishing awake from anaesthetised states: a randomised observational study

    Kenwright, D. A., Bernjak, A., Draegni, T., Dzeroski, S., Entwistle, M., Horvat, M., Kvandal, P., Landsverk, S. A., McClintock, P. V. E., Musizza, B., Petrovcic, J., Raeder, J., Sheppard, L., Smith, A. F., Stankovski, T. & Stefanovska, A., 12/2015, In: Anaesthesia. 70, 12, p. 1356–1368 12 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  41. Published

    Nonlinear mode decomposition: a noise-robust, adaptive decomposition method

    Iatsenko, D., McClintock, P. V. E. & Stefanovska, A., 09/2015, In: Physical Review E. 92, 3, 25 p., 032916.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  42. Published

    Coulomb blockade model of permeation and selectivity in biological ion channels

    Kaufman, I. K., McClintock, P. V. E. & Eisenberg, R. S., 11/08/2015, In: New Journal of Physics. 17, 8, 15 p., 083021.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  43. Published

    Dynamic markers based on blood perfusion fluctuations for selecting skin melanocytic lesions for biopsy

    Lancaster, G., Stefanovska, A., Pesce, M., Vezzoni, G. M., Loggini, B., Pingitore, R., Ghiara, F., Barachini, P., Cervadoro, G., Romanelli, M. & Rossi, M., 11/08/2015, In: Scientific Reports. 5, 12 p., 12825.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  44. Published

    Linear and synchrosqueezed time–frequency representations revisited: overview, standards of use, resolution, reconstruction, concentration, and algorithms

    Iatsenko, D., McClintock, P. V. E. & Stefanovska, A., 07/2015, In: Digital Signal Processing. 42, p. 1-26 26 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  45. Published

    Detecting chronotaxic systems from single-variable time series with separable amplitude and phase

    Lancaster, G., Clemson, P., Suprunenko, Y., Stankovski, T. & Stefanovska, A., 23/06/2015, In: Entropy. 17, 6, p. 4413-4438 26 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  46. Published

    Regular rather than chaotic origin of the resonant transport in superlattices

    Soskin, S. M., Khovanov, I. A. & McClintock, P. V. E., 24/04/2015, In: Physical review letters. 114, 16, 6 p., 166802.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  47. Published

    Chronotaxic systems: a simple paradigm to treat time-dependent oscillatory dynamics stable under continuous perturbation

    Barabash, M. L., Suprunenko, Y. F. & Stefanovska, A., 12/04/2015, In: Nonlinear Phenomena in Complex Systems. 18, 3, p. 392-400 9 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  48. Published

    Multi-switching combination synchronization of chaotic systems

    Vincent, U. E., Saseyi, A. O. & McClintock, P. V. E., 04/2015, In: Nonlinear Dynamics. 80, 1-2, p. 845-854 10 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  49. Published

    Coupling functions in networks of oscillators

    Stankovski, T., Ticcinelli, V., McClintock, P. V. E. & Stefanovska, A., 6/03/2015, In: New Journal of Physics. 17, 3, 12 p., 035002.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  50. Published

    Maximum amplitude of limit cycles in Liénard systems

    Turner, N., McClintock, P. V. E. & Stefanovska, A., 01/2015, In: Physical Review E. 91, 1, 13 p., 012927.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

  51. Published

    A tutorial on time-evolving dynamical Bayesian inference

    Stankovski, T., Duggento, A., McClintock, P. V. E. & Stefanovska, A., 10/12/2014, In: European Physical Journal - Special Topics. 223, 13, p. 2685–2703 19 p.

    Research output: Contribution to Journal/Magazine › Journal article › peer-review

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